JSON

Genome sc|0000437

Name

Not registered

Database

NCBI Assembly

Accession

GCA_030377865.1

Marked for deletion

This genome is currently not registered as the nomenclatural type or the reference genome of any names in the Registry, and it will be purged from the database soon unless it is linked to a name

Genomics

Accession
NCBI Assembly:GCA_030377865.1
Type
Single-Cell Amplified Genome (SAG)
Estimated Quality Metrics
  • Completeness: 91.3% (automated estimate: 91.5%)
  • Contamination: 0.0% (automated estimate: 2.8%)
  • Quality: 91.3 (automated estimate: 77.5)
Ribosomal and transfer RNA genes
  • 1 16S rRNA (up to 100.0%) (automated estimate: 1)
  • 1 23S rRNA (up to 100.0%) (automated estimate: 1)
  • tRNAs for 19 amino acids (automated estimate: 19)
Sequencing depth
70.0 ×
Source
Other features
  • G+C Content: 46.0% (automated estimate: 45.59%)
  • Coding Density: 82.46%
  • Codon Table: 11
  • N50: 55,343 bp
  • Contigs: 143
  • Largest Contig: 148,046 bp
  • Assembly Length: 4,988,988 bp
  • Ambiguous Assembly Fraction: 0.044%
Submitter comments
The assembly of the genome was carried out using the SPAdes v3.15.1 program. Prokka v1.14.6 program was used for genome annotation. Furthermore, the NCBI Prokaryotic Genome Annotation Pipeline (PGAP) is available in the NCBI database. Completion and contamination were estimated by the CheckM v.1.2.1 program and the MiGA project. The completion from the CheckM was 91% (0% contamination), while MiGA project informed 91.3% (0% contamination). This genome is proposed as the type for the new species Sedimentiflexa bahamondeae. 
Automated checks
Complete
Edit genome data
Last modified about 1 year ago


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