Keywords: GSC:MIxS;MIMS:6.0

BioSample Accession(s)

DRS212266

INSDC secondary accession

DRS212266

organism

subsurface metagenome

collection date

2006-08-12

sample name

CK0606-28H-S05

env_broad_scale

subsurface sediment biome

geo loc name

Japan:Aomori, off Shimokita Peninsula

env_local_scale

subseafloor

NCBI submission package

MIMS.me.sediment.6.0

depth

254.7 m

lat lon

41.1773 N 142.2014 E

project name

Metagenome analysis of microbial communities in subseafloor sediments off Shimokita Peninsula

elev

-1180 m

env_medium

marine sediment

BioSampleModel

MIMS.me.sediment

ENA-FIRST-PUBLIC

2021-12-03

ENA-LAST-UPDATE

2024-06-02

Metadata as EBI XML

<RUN_SET>
<RUN accession="DRR310875" alias="DRR310875" center_name="JAMSTEC" broker_name="DDBJ">
  <IDENTIFIERS>
    <PRIMARY_ID>DRR310875</PRIMARY_ID>
    <SUBMITTER_ID namespace="JAMSTEC">DRR310875</SUBMITTER_ID>
  </IDENTIFIERS>
  <TITLE>Illumina HiSeq 2500 paired end sequencing of SAMD00394289</TITLE>
  <EXPERIMENT_REF accession="DRX300295" refcenter="JAMSTEC" refname="DRX300295">
    <IDENTIFIERS>
      <PRIMARY_ID>DRX300295</PRIMARY_ID>
    </IDENTIFIERS>
  </EXPERIMENT_REF>
  <RUN_LINKS>
    <RUN_LINK>
      <XREF_LINK>
        <DB>ENA-SUBMISSION</DB>
        <ID>DRA012469</ID>
      </XREF_LINK>
    </RUN_LINK>
    <RUN_LINK>
      <XREF_LINK>
        <DB>ENA-STUDY</DB>
        <ID>DRP007949</ID>
      </XREF_LINK>
    </RUN_LINK>
    <RUN_LINK>
      <XREF_LINK>
        <DB>ENA-SAMPLE</DB>
        <ID>DRS212266</ID>
      </XREF_LINK>
    </RUN_LINK>
    <RUN_LINK>
      <XREF_LINK>
        <DB>ENA-FASTQ-FILES</DB>
        <ID><![CDATA[https://www.ebi.ac.uk/ena/portal/api/filereport?accession=DRR310875&result=read_run&fields=run_accession,fastq_ftp,fastq_md5,fastq_bytes]]></ID>
      </XREF_LINK>
    </RUN_LINK>
    <RUN_LINK>
      <XREF_LINK>
        <DB>ENA-SUBMITTED-FILES</DB>
        <ID><![CDATA[https://www.ebi.ac.uk/ena/portal/api/filereport?accession=DRR310875&result=read_run&fields=run_accession,submitted_ftp,submitted_md5,submitted_bytes,submitted_format]]></ID>
      </XREF_LINK>
    </RUN_LINK>
  </RUN_LINKS>
  <RUN_ATTRIBUTES>
    <RUN_ATTRIBUTE>
      <TAG>ENA-STATUS-ID</TAG>
      <VALUE>4</VALUE>
    </RUN_ATTRIBUTE>
    <RUN_ATTRIBUTE>
      <TAG>ENA-FIRST-PUBLIC</TAG>
      <VALUE>2021-12-05</VALUE>
    </RUN_ATTRIBUTE>
    <RUN_ATTRIBUTE>
      <TAG>ENA-LAST-UPDATE</TAG>
      <VALUE>2022-05-01</VALUE>
    </RUN_ATTRIBUTE>
    <RUN_ATTRIBUTE>
      <TAG>ENA-BASE-COUNT</TAG>
      <VALUE>2245045404</VALUE>
    </RUN_ATTRIBUTE>
    <RUN_ATTRIBUTE>
      <TAG>ENA-SPOT-COUNT</TAG>
      <VALUE>4472202</VALUE>
    </RUN_ATTRIBUTE>
  </RUN_ATTRIBUTES>
</RUN>
</RUN_SET>