JSON

Genome sc|0004380

Name

Not registered

Database

NCBI Assembly

Accession

JBRACL000000000

Marked for deletion

This genome is currently not registered as the nomenclatural type or the reference genome of any names in the Registry, and it will be purged from the database soon unless it is linked to a name

Genomics

Accession
NCBI Assembly:JBRACL000000000
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
  • Completeness: 99.74%
  • Contamination: 1.02%
  • Quality: 94.64
Ribosomal and transfer RNA genes
  • 2 16S rRNAs (up to 100.0%)
  • 1 23S rRNA (up to 36.0%)
  • tRNAs for 36 amino acids
Sequencing depth
59.0 ×
Source
Other features
  • G+C Content: 30.47%
Submitter comments
The tRNA genes were identified using the Prokka pipeline, while rRNA genes were detected with Barrnap. Although Barrnap indicated low completeness of the 16S rRNA gene in the genome assembly (presence of V1-V4 16S rRNA gene only), full-length 16S rRNA gene sequencing using PacBio (NCBI SRA accession: SRR35543629) from fecal DNA revealed a complete 16S rRNA gene with 100% identity to the corresponding sequence in the genome assembly. Therefore, the 16S rRNA gene is considered complete. Genome completeness and contamination were further assessed using CheckM2 v1.1.0. The NCBI 16S rRNA accession number is PX000510, and the raw read FASTQ files are available under the accession numbers SRR35216256, SRR35216255, and SRR35216254.
Automated checks
Failed: Cannot find ncbi:assembly:JBRACL000000000
Edit genome data
Last modified 3 months ago


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