SeqCode Registry
cognitis nomina
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Genomes
sc|0000443
JSON
Genome sc|0000443
Name
Bipolaricaulis anaerobius
Ts
Database
NCBI Assembly
Accession
GCA_900465355.1
Genomics
Accession
NCBI Assembly:
GCA_900465355.1
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
Completeness:
91.53%
Contamination:
0.0%
Quality:
91.53
Ribosomal and transfer RNA genes
1 16S rRNA (up to 100.0%)
1 23S rRNA (up to 100.0%)
tRNAs for 19 amino acids
Sequencing depth
436.0 ×
Source
BioSample: SAMEA4698766
Other features
G+C Content:
68.21%
Coding Density:
93.02%
Codon Table:
11
N50:
1,324,338 bp
Contigs:
1
Largest Contig:
1,324,338 bp
Assembly Length:
1,324,338 bp
Ambiguous Assembly Fraction:
0.0%
Automated checks
Complete
Last modified
8 days ago
Sample Metadata
BioSample entries
BioSample: SAMEA4698766
Date
Collection Date:
2016-03
Location
Geographic Location Latitude:
56.47 N
Geographic Location Longitude:
10.04 E
Toponym
Geographic Location Country And Or Sea:
Denmark
Environment
Environment Biome:
Anaerobic digester microbiome
Environment Feature:
mesophilic sludge digester
Other
Not detected
Package
Ena Checklist:
ERC000023
All retrieved samples
SAMEA4698766
: Candidatus Bipolaricaulis anaerobius RAN1 MAG
Metadata retrieved
8 days ago
© 2022-2024 The SeqCode Initiative
All information contributed to the SeqCode Registry is released under the terms of the
Creative Commons Attribution (CC BY) 4.0
license
Automated Estimates
×
This genome was automatically retrieved and processed using MiGA (The Microbial Genomes Atlas)
[1]
, and the estimate has not been overridden by the submitter.
Rodriguez-R et al, 2018, NAR.
DOI: 10.1093/nar/gky467
SAMEA4698766
×
Metadata retrieved using the EBI API
BioSample Accession(s)
SAMEA4698766, ERS2518938
ENA-CHECKLIST
ERC000023
environment (material)
Anaerobic digester biomass
organism
Candidatus Acetothermia bacterium Ran1
collection date
2016-03
geographic location (longitude)
10.04 E
geographic location (latitude)
56.47 N
scientific_name
Candidatus Acetothermia bacterium Ran1
investigation type
metagenome
ENA-FIRST-PUBLIC
2018-05-30
project name
Normigas
sequencing method
Illumina and Nanopore
wastewater/sludge environmental package
wastewater/sludge
ENA-LAST-UPDATE
2018-05-30
environment (biome)
Anaerobic digester microbiome
environment (feature)
mesophilic sludge digester
geographic location (country and/or sea)
Denmark
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