Genome sc|0000444


Database

NCBI Assembly

Accession

GCA_000024465.1

Genomics

Accession
NCBI Assembly:GCA_000024465.1
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
  • Completeness: 99.94%
  • Contamination: 0.15%
  • Quality: 99.19
Ribosomal and transfer RNA genes
  • 1 16S rRNA (up to 100.0%)
  • 1 23S rRNA (up to 100.0%)
  • tRNAs for 19 amino acids
Sequencing depth
46.0 ×
Source
Other features
  • G+C Content: 48.85%
  • Coding Density: 91.12%
  • Codon Table: 11
  • N50: 2,753,527 bp
  • Contigs: 1
  • Largest Contig: 2,753,527 bp
  • Assembly Length: 2,753,527 bp
  • Ambiguous Assembly Fraction: 0.0%
Submitter comments
The information about genome coverage was received from the original authors via personal communication (see below). From: s-jkim@kordi.re.kr, Hyun-Myung Oh

Accoding to Dr. Kwon at kiost (kkkwon@kiost.ac.kr) abi 3730 xl sequencing coverage was 2x from 4,512-clone genomic library and the additional pyrosequencing runs were done 3 times.
I could not get raw reads from pyrosequencing, I expect not more that 100k reads per 454 run.
Since Macrogen reported tens of thounsand reads per 454 run, and they did it three times to get more than 40 phred score, the following calculation would make sense ! 
100k * 3 run * 400 bp / 2.7 Mbp = 44.44 x
So our final decision on the genomic coverage of the completeted genome of IMCC1322 should be 46 folds.
 
Automated checks
Complete

Last modified about 1 month ago

Sample Metadata

BioSample entries
Date
Not detected
Location
Not detected
Toponym
Not detected
Environment
Not detected
Other
Not detected
Package
Ncbi Submission Package: Generic.1.0
Biosamplemodel: Generic
All retrieved samples

Metadata retrieved about 1 month ago


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