SeqCode Registry
cognitis nomina
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Genomes
sc|0000502
JSON
Genome sc|0000502
Name
Roseiconus nitratireducens
Ts
Database
NCBI Assembly
Accession
GCA_008629675.1
Genomics
Accession
NCBI Assembly:
GCA_008629675.1
Type
Isolate Genome
Estimated Quality Metrics
Completeness:
93.4%
Contamination:
0.9%
Quality:
88.9
Ribosomal and transfer RNA genes
2 16S rRNAs (up to 100.0%)
1 23S rRNA (up to 100.0%)
tRNAs for 20 amino acids
Sequencing depth
100.0 ×
Source
BioSample: SAMN12628151
Other features
G+C Content:
59.96%
Coding Density:
86.8%
Codon Table:
11
N50:
403,299 bp
Contigs:
108
Largest Contig:
814,056 bp
Assembly Length:
8,196,902 bp
Ambiguous Assembly Fraction:
0.0%
Automated checks
Complete
Last modified
10 days ago
Sample Metadata
BioSample entries
BioSample: SAMN12628151
Date
Collection Date:
2018-05-24
Location
Not detected
Toponym
Geo Loc Name:
India: Chilika lagoon
Environment
Sample Type:
Sediment
Isolation Source:
sediment
Other
Not detected
Package
Ncbi Submission Package:
Microbe.1.0
Biosamplemodel:
Microbe, viral or environmental
All retrieved samples
SAMN12628151
: Microbe sample from Roseiconus nitratireducens
Metadata retrieved
10 days ago
© 2022-2024 The SeqCode Initiative
All information contributed to the SeqCode Registry is released under the terms of the
Creative Commons Attribution (CC BY) 4.0
license
Automated Estimates
×
This genome was automatically retrieved and processed using MiGA (The Microbial Genomes Atlas)
[1]
, and the estimate has not been overridden by the submitter.
Rodriguez-R et al, 2018, NAR.
DOI: 10.1093/nar/gky467
SAMN12628151
×
Metadata retrieved using the EBI API
BioSample Accession(s)
SAMN12628151
strain
JC645
collection_date
2018-05-24
type-material
type strain of Roseiconus nitratireducens
NCBI submission package
Microbe.1.0
organism
Roseiconus nitratireducens
geo_loc_name
India: Chilika lagoon
collected_by
Dhanesh Kumar
sample_type
Sediment
isolation_source
sediment
BioSampleModel
Microbe, viral or environmental
ENA-FIRST-PUBLIC
2019-08-23
ENA-LAST-UPDATE
2021-02-24
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