Genome sc|0005360

Genomics

Accession

NCBI Assembly:GCA_900302705.1

Type

Metagenome-Assembled Genome (MAG)

Estimated Quality Metrics

• Completeness: 87.7%
• Contamination: 0.9%
• Quality: 83.2

Ribosomal and transfer RNA genes

• 0 16S rRNAs
• 0 23S rRNAs
• tRNAs for 15 amino acids

Source

• BioSample: SAMEA104150702
• And 19 more…

Other features

• G+C Content: 48.78%
• Coding Density: 87.75%
• Codon Table: 11
• N50: 29,632 bp
• Contigs: 151
• Largest Contig: 106,945 bp
• Assembly Length: 2,770,094 bp
• Ambiguous Assembly Fraction: 0.0%

Automated checks

Complete

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Last modified about 2 months ago

Sample Metadata

BioSample entries

• BioSample: SAMEA104150702
• And 19 more…

Date

Collection Date: 2010-12-24

Location

Lat Lon: 45° 11′ 24″ N, 8° 15′ E

Geographic Location Latitude: 45° 11′ 24″ N

Geographic Location Longitude: 8° 15′ E

View map of sampling locations

Toponym

Geo Loc Name: Italy: Vercelli - Italian Rice Research Institute

Geographic Location Country And Or Sea: Italy

Environment

Isolation Source: Rhizosphere soil with gypsum - replicate 4 • Rhizosphere soil with gypsum - replicate 3 • Rhizosphere soil with gypsum - replicate 2 • Rhizosphere soil with gypsum - replicate 1 • Rhizosphere soil without gypsum - replicate 4 • Rhizosphere soil without gypsum - replicate 3 • Rhizosphere soil without gypsum - replicate 2 • Rhizosphere soil without gypsum - replicate 1 • Bulk soil with gypsum - replicate 4 • Bulk soil with gypsum - replicate 3 • Bulk soil with gypsum - replicate 2 • Bulk soil with gypsum - replicate 1 • Bulk soil without gypsum - replicate 4 • Bulk soil without gypsum - replicate 3 • Bulk soil without gypsum - replicate 2 • Bulk soil without gypsum - replicate 1 • Freshly flooded soil - replicate 3 • Freshly flooded soil - replicate 2 • Freshly flooded soil - replicate 1

Environment Biome: agricultural field

Environment Feature: rice paddy

Other

Geographic Location Depth: 0.1

Package

Ena Checklist: ERC000022

Ncbi Submission Package: Metagenome.environmental.1.0

Biosamplemodel: Metagenome or environmental

All retrieved samples

• SAMEA104150702: Nitrospirae bacterium environmental genome
• SAMN07349452: Rhizosphere soil with gypsum - replicate 4
• SAMN07349451: Rhizosphere soil with gypsum - replicate 3
• SAMN07349450: Rhizosphere soil with gypsum - replicate 2
• SAMN07349449: Rhizosphere soil with gypsum - replicate 1
• SAMN07349448: Rhizosphere soil without gypsum - replicate 4
• SAMN07349447: Rhizosphere soil without gypsum - replicate 3
• SAMN07349446: Rhizosphere soil without gypsum - replicate 2
• SAMN07349445: Rhizosphere soil without gypsum - replicate 1
• SAMN07349444: Bulk soil with gypsum - replicate 4
• SAMN07349443: Bulk soil with gypsum - replicate 3
• SAMN07349442: Bulk soil with gypsum - replicate 2
• SAMN07349441: Bulk soil with gypsum - replicate 1
• SAMN07349440: Bulk soil without gypsum - replicate 4
• SAMN07349439: Bulk soil without gypsum - replicate 3
• SAMN07349438: Bulk soil without gypsum - replicate 2
• SAMN07349437: Bulk soil without gypsum - replicate 1
• SAMN07349436: Freshly flooded soil - replicate 3
• SAMN07349435: Freshly flooded soil - replicate 2
• SAMN07349434: Freshly flooded soil - replicate 1

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Metadata retrieved about 2 months ago