JSON

Genome sc|0005363

Name

Not registered

Database

NCBI Assembly

Accession

JBRKAZ000000000

Marked for deletion

This genome is currently not registered as the nomenclatural type or the reference genome of any names in the Registry, and it will be purged from the database soon unless it is linked to a name

Genomics

Accession
NCBI Assembly:JBRKAZ000000000
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
  • Completeness: 97.78%
  • Contamination: 5.58%
  • Quality: 69.88
Ribosomal and transfer RNA genes
  • 1 16S rRNA (up to 100.0%)
  • 1 23S rRNA (up to 100.0%)
  • tRNAs for 20 amino acids
Sequencing depth
100.0 ×
Source
Other features
  • G+C Content: 33.59%
Submitter comments
The completeness and contamination values reported were calculated using the CheckM tool. According to CheckM2, the genome shows 98.62% completeness and 7.42% contamination. Notably, the housekeeping genes responsible for the contamination estimate are present in two copies but located adjacently within the same assembled contig. This suggests that these genes are duplicated in the genome.
Automated checks
Failed: Cannot find ncbi:assembly:JBRKAZ000000000
Edit genome data
Last modified 2 months ago

Sample Metadata

BioSample entries
Date
Collection Date: 2012-04-01
Location
Lat Lon: 47° 45′ 36″ N, 127° 45′ 36″ W
View map of sampling locations
Toponym
Geo Loc Name: Pacific Ocean
Environment
Env Broad Scale: subsurface biome
Env Local Scale: Subseafloor oceanic crust
Env Medium: oceanic crust water
Other
Depth: 2661
Package
Ncbi Submission Package: MIMS.me.water.6.0
Biosamplemodel: MIGS/MIMS/MIMARKS.water
All retrieved samples
Metadata retrieved 2 months ago


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