Keywords: GSC:MIxS;MIMAG:6.0

BioSample Accession(s)

SAMN35615168, SRS20441800

collection_date

2015-05-01

INSDC secondary accession

SRS20441800

organism

Candidatus Endonucleobacter sp. (ex Gigantidas childressi)

env_broad_scale

ENVO:01000024

metagenomic

1

environmental-sample

1

env_local_scale

Hydrothermal vents

metagenome-source

mollusc metagenome

isolate

IAP7

NCBI submission package

MIMAG.symbiont-associated.6.0

host

Gigantidas childressi

geo_loc_name

USA: Louisiana, Mississippi Canyon site, Gulf of Mexico

host_life_stage

Adult

host_dependence

Parasite

env_medium

Whole animals

lat_lon

28.123700 N 89.140400 W

sym_life_cycle_type

Simple life cycle

isolation_source

adult deep-sea mussel near hydrothermal vent

sample-type

metagenomic assembly

sample derived-from

SAMN35677411

BioSampleModel

MIMAG.symbiont-associated

ENA-FIRST-PUBLIC

2023-06-12

ENA-LAST-UPDATE

2024-02-11

Metadata as EBI XML

<EXPERIMENT_SET>
<EXPERIMENT accession="SRX24240475" alias="LMD_libraries" center_name="SUB14375378" broker_name="NCBI">
  <IDENTIFIERS>
    <PRIMARY_ID>SRX24240475</PRIMARY_ID>
    <SUBMITTER_ID namespace="SUB14375378">LMD_libraries</SUBMITTER_ID>
  </IDENTIFIERS>
  <TITLE>LMD_libraries</TITLE>
  <STUDY_REF accession="SRP489298">
    <IDENTIFIERS>
      <PRIMARY_ID>SRP489298</PRIMARY_ID>
      <EXTERNAL_ID namespace="BioProject">PRJNA979916</EXTERNAL_ID>
    </IDENTIFIERS>
  </STUDY_REF>
  <DESIGN>
    <DESIGN_DESCRIPTION>N/A</DESIGN_DESCRIPTION>
    <SAMPLE_DESCRIPTOR accession="SRS20441800">
      <IDENTIFIERS>
        <PRIMARY_ID>SRS20441800</PRIMARY_ID>
        <EXTERNAL_ID namespace="BioSample">SAMN35615168</EXTERNAL_ID>
      </IDENTIFIERS>
    </SAMPLE_DESCRIPTOR>
    <LIBRARY_DESCRIPTOR>
      <LIBRARY_NAME>LMD_libraries</LIBRARY_NAME>
      <LIBRARY_STRATEGY>RNA-Seq</LIBRARY_STRATEGY>
      <LIBRARY_SOURCE>TRANSCRIPTOMIC</LIBRARY_SOURCE>
      <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
      <LIBRARY_LAYOUT>
        <PAIRED/>
      </LIBRARY_LAYOUT>
    </LIBRARY_DESCRIPTOR>
  </DESIGN>
  <PLATFORM>
    <ILLUMINA>
      <INSTRUMENT_MODEL>Illumina HiSeq 3000</INSTRUMENT_MODEL>
    </ILLUMINA>
  </PLATFORM>
  <EXPERIMENT_LINKS>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-SAMPLE</DB>
        <ID>SRS20441800</ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-SUBMISSION</DB>
        <ID>SRA1845101</ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-FASTQ-FILES</DB>
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      </XREF_LINK>
    </EXPERIMENT_LINK>
    <EXPERIMENT_LINK>
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      </XREF_LINK>
    </EXPERIMENT_LINK>
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  <EXPERIMENT_ATTRIBUTES>
    <EXPERIMENT_ATTRIBUTE>
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      <VALUE>4</VALUE>
    </EXPERIMENT_ATTRIBUTE>
  </EXPERIMENT_ATTRIBUTES>
</EXPERIMENT>
</EXPERIMENT_SET>

Metadata as EBI XML

<EXPERIMENT_SET>
<EXPERIMENT accession="SRX24174227" alias="Bulk_transcriptomic_libraries" center_name="SUB14362407" broker_name="NCBI">
  <IDENTIFIERS>
    <PRIMARY_ID>SRX24174227</PRIMARY_ID>
    <SUBMITTER_ID namespace="SUB14362407">Bulk_transcriptomic_libraries</SUBMITTER_ID>
  </IDENTIFIERS>
  <TITLE>Bulk_transcriptomic_libraries</TITLE>
  <STUDY_REF accession="SRP489298">
    <IDENTIFIERS>
      <PRIMARY_ID>SRP489298</PRIMARY_ID>
      <EXTERNAL_ID namespace="BioProject">PRJNA979916</EXTERNAL_ID>
    </IDENTIFIERS>
  </STUDY_REF>
  <DESIGN>
    <DESIGN_DESCRIPTION>N/A</DESIGN_DESCRIPTION>
    <SAMPLE_DESCRIPTOR accession="SRS20441800">
      <IDENTIFIERS>
        <PRIMARY_ID>SRS20441800</PRIMARY_ID>
        <EXTERNAL_ID namespace="BioSample">SAMN35615168</EXTERNAL_ID>
      </IDENTIFIERS>
    </SAMPLE_DESCRIPTOR>
    <LIBRARY_DESCRIPTOR>
      <LIBRARY_NAME>Bulk_transcriptomic_libraries</LIBRARY_NAME>
      <LIBRARY_STRATEGY>RNA-Seq</LIBRARY_STRATEGY>
      <LIBRARY_SOURCE>TRANSCRIPTOMIC</LIBRARY_SOURCE>
      <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
      <LIBRARY_LAYOUT>
        <PAIRED/>
      </LIBRARY_LAYOUT>
    </LIBRARY_DESCRIPTOR>
  </DESIGN>
  <PLATFORM>
    <ILLUMINA>
      <INSTRUMENT_MODEL>Illumina HiSeq 3000</INSTRUMENT_MODEL>
    </ILLUMINA>
  </PLATFORM>
  <EXPERIMENT_LINKS>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-SAMPLE</DB>
        <ID>SRS20441800</ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-SUBMISSION</DB>
        <ID>SRA1840961</ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-FASTQ-FILES</DB>
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      </XREF_LINK>
    </EXPERIMENT_LINK>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-SUBMITTED-FILES</DB>
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      </XREF_LINK>
    </EXPERIMENT_LINK>
  </EXPERIMENT_LINKS>
  <EXPERIMENT_ATTRIBUTES>
    <EXPERIMENT_ATTRIBUTE>
      <TAG>ENA-STATUS-ID</TAG>
      <VALUE>4</VALUE>
    </EXPERIMENT_ATTRIBUTE>
  </EXPERIMENT_ATTRIBUTES>
</EXPERIMENT>
</EXPERIMENT_SET>

Metadata as EBI XML

<EXPERIMENT_SET>
<EXPERIMENT accession="SRX23598242" alias="5069_A_CCS1" center_name="SUB14207075" broker_name="NCBI">
  <IDENTIFIERS>
    <PRIMARY_ID>SRX23598242</PRIMARY_ID>
    <SUBMITTER_ID namespace="SUB14207075">5069_A_CCS1</SUBMITTER_ID>
  </IDENTIFIERS>
  <TITLE>5069_A_CCS1</TITLE>
  <STUDY_REF accession="SRP489298">
    <IDENTIFIERS>
      <PRIMARY_ID>SRP489298</PRIMARY_ID>
      <EXTERNAL_ID namespace="BioProject">PRJNA979916</EXTERNAL_ID>
    </IDENTIFIERS>
  </STUDY_REF>
  <DESIGN>
    <DESIGN_DESCRIPTION>N/A</DESIGN_DESCRIPTION>
    <SAMPLE_DESCRIPTOR accession="SRS20441800">
      <IDENTIFIERS>
        <PRIMARY_ID>SRS20441800</PRIMARY_ID>
        <EXTERNAL_ID namespace="BioSample">SAMN35615168</EXTERNAL_ID>
      </IDENTIFIERS>
    </SAMPLE_DESCRIPTOR>
    <LIBRARY_DESCRIPTOR>
      <LIBRARY_NAME>5069_A_CCS1</LIBRARY_NAME>
      <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
      <LIBRARY_SOURCE>METAGENOMIC</LIBRARY_SOURCE>
      <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
      <LIBRARY_LAYOUT>
        <SINGLE/>
      </LIBRARY_LAYOUT>
    </LIBRARY_DESCRIPTOR>
  </DESIGN>
  <PLATFORM>
    <PACBIO_SMRT>
      <INSTRUMENT_MODEL>Sequel</INSTRUMENT_MODEL>
    </PACBIO_SMRT>
  </PLATFORM>
  <EXPERIMENT_LINKS>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-SAMPLE</DB>
        <ID>SRS20441800</ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-SUBMISSION</DB>
        <ID>SRA1800965</ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-FASTQ-FILES</DB>
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      </XREF_LINK>
    </EXPERIMENT_LINK>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-SUBMITTED-FILES</DB>
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      </XREF_LINK>
    </EXPERIMENT_LINK>
  </EXPERIMENT_LINKS>
  <EXPERIMENT_ATTRIBUTES>
    <EXPERIMENT_ATTRIBUTE>
      <TAG>ENA-STATUS-ID</TAG>
      <VALUE>4</VALUE>
    </EXPERIMENT_ATTRIBUTE>
  </EXPERIMENT_ATTRIBUTES>
</EXPERIMENT>
</EXPERIMENT_SET>