JSON

Genome sc|0005383

Name

Nitrosymbium coscinodermaeTs

Database

NCBI Assembly

Accession

GCA_011523385.1

Genomics

Accession
NCBI Assembly:GCA_011523385.1
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
  • Completeness: 98.64%
  • Contamination: 3.86%
  • Quality: 79.34
Ribosomal and transfer RNA genes
  • 1 16S rRNA (up to 100.0%)
  • 2 23S rRNAs (up to 63.0%)
  • tRNAs for 20 amino acids
Sequencing depth
98.64 ×
Source
Other features
  • G+C Content: 56.7%
  • Coding Density: 88.41%
  • Codon Table: 11
  • N50: 122,077 bp
  • Contigs: 38
  • Largest Contig: 342,572 bp
  • Assembly Length: 2,506,777 bp
  • Ambiguous Assembly Fraction: 0.036%
Automated checks
Complete
Last modified 4 months ago

Sample Metadata

BioSample entries
Date
Collection Date: 2016-08-01/2017-02-20 • 2016-08-01 • 2017-02-20
Location
Lat Lon: 19° 55′ 57″ S, 146° 31′ 7″ E
View map of sampling locations
Toponym
Geo Loc Name: Australia: Great Barrier Reef, Magnetic Island, Geoffrey Bay
Environment
Sample Type: metagenomic assembly
Isolation Source: coral reef sponge • coral reef sponge tissue BPA_36386 • coral reef sponge tissue BPA_36387 • coral reef sponge tissue BPA_36388 • coral reef sponge tissue BPA_36404 • coral reef sponge tissue BPA_36405 • coral reef sponge tissue BPA_36406
Env Broad Scale: Metagenome assambled genome of coral reef sponge
Env Local Scale: inshore region Great Barrier Reef
Env Medium: sponge tissue
Other
Host: Coscinoderma mathewsi
Package
Biosamplemodel: MIMAG.host-associated • Metagenome or environmental
All retrieved samples
Metadata retrieved 4 months ago


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