Keywords: GSC:MIxS;MIMAG:5.0

BioSample Accession(s)

SAMN13494930

collection_date

2016-08-01/2017-02-20

organism

Nitrospira sp.

env_broad_scale

Metagenome assambled genome of coral reef sponge

metagenomic

1

derived-from

This BioSample is a metagenomic assembly obtained from the coral reef metagenome BioSample: SAMN13567169, SAMN13567170, SAMN13567171, SAMN13567172, SAMN13567173, SAMN13567174

environmental-sample

1

env_local_scale

inshore region Great Barrier Reef

metagenome-source

coral reef metagenome

isolate

CO36405bin_1

NCBI submission package

MIMAG.host-associated.5.0

host

Coscinoderma mathewsi

geo_loc_name

Australia: Great Barrier Reef, Magnetic Island, Geoffrey Bay

env_medium

sponge tissue

lat_lon

19.9326 S 146.51861 E

isolation_source

coral reef sponge

sample-type

metagenomic assembly

BioSampleModel

MIMAG.host-associated

ENA-FIRST-PUBLIC

2019-12-13

ENA-LAST-UPDATE

2021-02-28

BioSample Accession(s)

SAMN13567169, SRS5829710

collection_date

2016-08-01

INSDC secondary accession

SRS5829710

NCBI submission package

Metagenome.environmental.1.0

organism

sponge metagenome

host

Coscinoderma mathewsi

geo_loc_name

Australia: Great Barrier Reef, Magnetic Island, Geoffrey Bay

lat_lon

19.9326 S 146.51861 E

isolation_source

coral reef sponge tissue BPA_36386

BioSampleModel

Metagenome or environmental

ENA-FIRST-PUBLIC

2019-12-15

ENA-LAST-UPDATE

2021-02-28

BioSample Accession(s)

SAMN13567170, SRS5829711

collection_date

2016-08-01

INSDC secondary accession

SRS5829711

NCBI submission package

Metagenome.environmental.1.0

organism

sponge metagenome

host

Coscinoderma mathewsi

geo_loc_name

Australia: Great Barrier Reef, Magnetic Island, Geoffrey Bay

lat_lon

19.9326 S 146.51861 E

isolation_source

coral reef sponge tissue BPA_36387

BioSampleModel

Metagenome or environmental

ENA-FIRST-PUBLIC

2019-12-15

ENA-LAST-UPDATE

2021-02-28

BioSample Accession(s)

SAMN13567171, SRS5829713

collection_date

2016-08-01

INSDC secondary accession

SRS5829713

NCBI submission package

Metagenome.environmental.1.0

organism

sponge metagenome

host

Coscinoderma mathewsi

geo_loc_name

Australia: Great Barrier Reef, Magnetic Island, Geoffrey Bay

lat_lon

19.9326 S 146.51861 E

isolation_source

coral reef sponge tissue BPA_36388

BioSampleModel

Metagenome or environmental

ENA-FIRST-PUBLIC

2019-12-15

ENA-LAST-UPDATE

2021-02-28

BioSample Accession(s)

SAMN13567172, SRS5829714

collection_date

2017-02-20

INSDC secondary accession

SRS5829714

NCBI submission package

Metagenome.environmental.1.0

organism

sponge metagenome

host

Coscinoderma mathewsi

geo_loc_name

Australia: Great Barrier Reef, Magnetic Island, Geoffrey Bay

lat_lon

19.9326 S 146.51861 E

isolation_source

coral reef sponge tissue BPA_36404

BioSampleModel

Metagenome or environmental

ENA-FIRST-PUBLIC

2019-12-15

ENA-LAST-UPDATE

2021-02-28

BioSample Accession(s)

SAMN13567173, SRS5829715

collection_date

2017-02-20

INSDC secondary accession

SRS5829715

NCBI submission package

Metagenome.environmental.1.0

organism

sponge metagenome

host

Coscinoderma mathewsi

geo_loc_name

Australia: Great Barrier Reef, Magnetic Island, Geoffrey Bay

lat_lon

19.9326 S 146.51861 E

isolation_source

coral reef sponge tissue BPA_36405

BioSampleModel

Metagenome or environmental

ENA-FIRST-PUBLIC

2019-12-15

ENA-LAST-UPDATE

2021-02-28

BioSample Accession(s)

SAMN13567174, SRS5829716

collection_date

2017-02-20

INSDC secondary accession

SRS5829716

NCBI submission package

Metagenome.environmental.1.0

organism

sponge metagenome

host

Coscinoderma mathewsi

geo_loc_name

Australia: Great Barrier Reef, Magnetic Island, Geoffrey Bay

lat_lon

19.9326 S 146.51861 E

isolation_source

coral reef sponge tissue BPA_36406

BioSampleModel

Metagenome or environmental

ENA-FIRST-PUBLIC

2019-12-15

ENA-LAST-UPDATE

2021-02-28

Metadata as EBI XML

<EXPERIMENT_SET>
<EXPERIMENT accession="SRX7371526" alias="36386" center_name="SUB6659197" broker_name="NCBI">
  <IDENTIFIERS>
    <PRIMARY_ID>SRX7371526</PRIMARY_ID>
    <SUBMITTER_ID namespace="SUB6659197">36386</SUBMITTER_ID>
  </IDENTIFIERS>
  <TITLE>metagenome of coral reef microbiome: sponge tissue</TITLE>
  <STUDY_REF accession="SRP237667">
    <IDENTIFIERS>
      <PRIMARY_ID>SRP237667</PRIMARY_ID>
      <EXTERNAL_ID namespace="BioProject">PRJNA594068</EXTERNAL_ID>
    </IDENTIFIERS>
  </STUDY_REF>
  <DESIGN>
    <DESIGN_DESCRIPTION>Nextera XT Library Preparation Kit</DESIGN_DESCRIPTION>
    <SAMPLE_DESCRIPTOR accession="SRS5829710">
      <IDENTIFIERS>
        <PRIMARY_ID>SRS5829710</PRIMARY_ID>
        <SUBMITTER_ID namespace="pda|bettinaglasl">BPA_36386</SUBMITTER_ID>
      </IDENTIFIERS>
    </SAMPLE_DESCRIPTOR>
    <LIBRARY_DESCRIPTOR>
      <LIBRARY_NAME>36386</LIBRARY_NAME>
      <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
      <LIBRARY_SOURCE>METAGENOMIC</LIBRARY_SOURCE>
      <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
      <LIBRARY_LAYOUT>
        <PAIRED/>
      </LIBRARY_LAYOUT>
    </LIBRARY_DESCRIPTOR>
  </DESIGN>
  <PLATFORM>
    <ILLUMINA>
      <INSTRUMENT_MODEL>Illumina HiSeq 2500</INSTRUMENT_MODEL>
    </ILLUMINA>
  </PLATFORM>
  <EXPERIMENT_LINKS>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-SAMPLE</DB>
        <ID>SRS5829710</ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-SUBMISSION</DB>
        <ID>SRA1012330</ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-FASTQ-FILES</DB>
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    <EXPERIMENT_LINK>
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      </XREF_LINK>
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  <EXPERIMENT_ATTRIBUTES>
    <EXPERIMENT_ATTRIBUTE>
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      <VALUE>4</VALUE>
    </EXPERIMENT_ATTRIBUTE>
  </EXPERIMENT_ATTRIBUTES>
</EXPERIMENT>
</EXPERIMENT_SET>

Metadata as EBI XML

<EXPERIMENT_SET>
<EXPERIMENT accession="SRX7371527" alias="36387" center_name="SUB6659197" broker_name="NCBI">
  <IDENTIFIERS>
    <PRIMARY_ID>SRX7371527</PRIMARY_ID>
    <SUBMITTER_ID namespace="SUB6659197">36387</SUBMITTER_ID>
  </IDENTIFIERS>
  <TITLE>metagenome of coral reef microbiome: sponge tissue</TITLE>
  <STUDY_REF accession="SRP237667">
    <IDENTIFIERS>
      <PRIMARY_ID>SRP237667</PRIMARY_ID>
      <EXTERNAL_ID namespace="BioProject">PRJNA594068</EXTERNAL_ID>
    </IDENTIFIERS>
  </STUDY_REF>
  <DESIGN>
    <DESIGN_DESCRIPTION>Nextera XT Library Preparation Kit</DESIGN_DESCRIPTION>
    <SAMPLE_DESCRIPTOR accession="SRS5829711">
      <IDENTIFIERS>
        <PRIMARY_ID>SRS5829711</PRIMARY_ID>
        <SUBMITTER_ID namespace="pda|bettinaglasl">BPA_36387</SUBMITTER_ID>
      </IDENTIFIERS>
    </SAMPLE_DESCRIPTOR>
    <LIBRARY_DESCRIPTOR>
      <LIBRARY_NAME>36387</LIBRARY_NAME>
      <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
      <LIBRARY_SOURCE>METAGENOMIC</LIBRARY_SOURCE>
      <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
      <LIBRARY_LAYOUT>
        <PAIRED/>
      </LIBRARY_LAYOUT>
    </LIBRARY_DESCRIPTOR>
  </DESIGN>
  <PLATFORM>
    <ILLUMINA>
      <INSTRUMENT_MODEL>Illumina HiSeq 2500</INSTRUMENT_MODEL>
    </ILLUMINA>
  </PLATFORM>
  <EXPERIMENT_LINKS>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-SAMPLE</DB>
        <ID>SRS5829711</ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-SUBMISSION</DB>
        <ID>SRA1012330</ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-FASTQ-FILES</DB>
        <ID><![CDATA[https://www.ebi.ac.uk/ena/portal/api/filereport?accession=SRX7371527&result=read_run&fields=run_accession,fastq_ftp,fastq_md5,fastq_bytes]]></ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-SUBMITTED-FILES</DB>
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      </XREF_LINK>
    </EXPERIMENT_LINK>
  </EXPERIMENT_LINKS>
  <EXPERIMENT_ATTRIBUTES>
    <EXPERIMENT_ATTRIBUTE>
      <TAG>ENA-STATUS-ID</TAG>
      <VALUE>4</VALUE>
    </EXPERIMENT_ATTRIBUTE>
  </EXPERIMENT_ATTRIBUTES>
</EXPERIMENT>
</EXPERIMENT_SET>

Metadata as EBI XML

<EXPERIMENT_SET>
<EXPERIMENT accession="SRX7371529" alias="36388" center_name="SUB6659197" broker_name="NCBI">
  <IDENTIFIERS>
    <PRIMARY_ID>SRX7371529</PRIMARY_ID>
    <SUBMITTER_ID namespace="SUB6659197">36388</SUBMITTER_ID>
  </IDENTIFIERS>
  <TITLE>metagenome of coral reef microbiome: sponge tissue</TITLE>
  <STUDY_REF accession="SRP237667">
    <IDENTIFIERS>
      <PRIMARY_ID>SRP237667</PRIMARY_ID>
      <EXTERNAL_ID namespace="BioProject">PRJNA594068</EXTERNAL_ID>
    </IDENTIFIERS>
  </STUDY_REF>
  <DESIGN>
    <DESIGN_DESCRIPTION>Nextera XT Library Preparation Kit</DESIGN_DESCRIPTION>
    <SAMPLE_DESCRIPTOR accession="SRS5829713">
      <IDENTIFIERS>
        <PRIMARY_ID>SRS5829713</PRIMARY_ID>
        <SUBMITTER_ID namespace="pda|bettinaglasl">BPA_36388</SUBMITTER_ID>
      </IDENTIFIERS>
    </SAMPLE_DESCRIPTOR>
    <LIBRARY_DESCRIPTOR>
      <LIBRARY_NAME>36388</LIBRARY_NAME>
      <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
      <LIBRARY_SOURCE>METAGENOMIC</LIBRARY_SOURCE>
      <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
      <LIBRARY_LAYOUT>
        <PAIRED/>
      </LIBRARY_LAYOUT>
    </LIBRARY_DESCRIPTOR>
  </DESIGN>
  <PLATFORM>
    <ILLUMINA>
      <INSTRUMENT_MODEL>Illumina HiSeq 2500</INSTRUMENT_MODEL>
    </ILLUMINA>
  </PLATFORM>
  <EXPERIMENT_LINKS>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-SAMPLE</DB>
        <ID>SRS5829713</ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-SUBMISSION</DB>
        <ID>SRA1012330</ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-FASTQ-FILES</DB>
        <ID><![CDATA[https://www.ebi.ac.uk/ena/portal/api/filereport?accession=SRX7371529&result=read_run&fields=run_accession,fastq_ftp,fastq_md5,fastq_bytes]]></ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-SUBMITTED-FILES</DB>
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      </XREF_LINK>
    </EXPERIMENT_LINK>
  </EXPERIMENT_LINKS>
  <EXPERIMENT_ATTRIBUTES>
    <EXPERIMENT_ATTRIBUTE>
      <TAG>ENA-STATUS-ID</TAG>
      <VALUE>4</VALUE>
    </EXPERIMENT_ATTRIBUTE>
  </EXPERIMENT_ATTRIBUTES>
</EXPERIMENT>
</EXPERIMENT_SET>

Metadata as EBI XML

<EXPERIMENT_SET>
<EXPERIMENT accession="SRX7371530" alias="36404" center_name="SUB6659197" broker_name="NCBI">
  <IDENTIFIERS>
    <PRIMARY_ID>SRX7371530</PRIMARY_ID>
    <SUBMITTER_ID namespace="SUB6659197">36404</SUBMITTER_ID>
  </IDENTIFIERS>
  <TITLE>metagenome of coral reef microbiome: sponge tissue</TITLE>
  <STUDY_REF accession="SRP237667">
    <IDENTIFIERS>
      <PRIMARY_ID>SRP237667</PRIMARY_ID>
      <EXTERNAL_ID namespace="BioProject">PRJNA594068</EXTERNAL_ID>
    </IDENTIFIERS>
  </STUDY_REF>
  <DESIGN>
    <DESIGN_DESCRIPTION>Nextera XT Library Preparation Kit</DESIGN_DESCRIPTION>
    <SAMPLE_DESCRIPTOR accession="SRS5829714">
      <IDENTIFIERS>
        <PRIMARY_ID>SRS5829714</PRIMARY_ID>
        <SUBMITTER_ID namespace="pda|bettinaglasl">BPA_36404</SUBMITTER_ID>
      </IDENTIFIERS>
    </SAMPLE_DESCRIPTOR>
    <LIBRARY_DESCRIPTOR>
      <LIBRARY_NAME>36404</LIBRARY_NAME>
      <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
      <LIBRARY_SOURCE>METAGENOMIC</LIBRARY_SOURCE>
      <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
      <LIBRARY_LAYOUT>
        <PAIRED/>
      </LIBRARY_LAYOUT>
    </LIBRARY_DESCRIPTOR>
  </DESIGN>
  <PLATFORM>
    <ILLUMINA>
      <INSTRUMENT_MODEL>Illumina HiSeq 2500</INSTRUMENT_MODEL>
    </ILLUMINA>
  </PLATFORM>
  <EXPERIMENT_LINKS>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-SAMPLE</DB>
        <ID>SRS5829714</ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-SUBMISSION</DB>
        <ID>SRA1012330</ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-FASTQ-FILES</DB>
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      </XREF_LINK>
    </EXPERIMENT_LINK>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-SUBMITTED-FILES</DB>
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    </EXPERIMENT_LINK>
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  <EXPERIMENT_ATTRIBUTES>
    <EXPERIMENT_ATTRIBUTE>
      <TAG>ENA-STATUS-ID</TAG>
      <VALUE>4</VALUE>
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</EXPERIMENT>
</EXPERIMENT_SET>

Metadata as EBI XML

<EXPERIMENT_SET>
<EXPERIMENT accession="SRX7371531" alias="36405" center_name="SUB6659197" broker_name="NCBI">
  <IDENTIFIERS>
    <PRIMARY_ID>SRX7371531</PRIMARY_ID>
    <SUBMITTER_ID namespace="SUB6659197">36405</SUBMITTER_ID>
  </IDENTIFIERS>
  <TITLE>metagenome of coral reef microbiome: sponge tissue</TITLE>
  <STUDY_REF accession="SRP237667">
    <IDENTIFIERS>
      <PRIMARY_ID>SRP237667</PRIMARY_ID>
      <EXTERNAL_ID namespace="BioProject">PRJNA594068</EXTERNAL_ID>
    </IDENTIFIERS>
  </STUDY_REF>
  <DESIGN>
    <DESIGN_DESCRIPTION>Nextera XT Library Preparation Kit</DESIGN_DESCRIPTION>
    <SAMPLE_DESCRIPTOR accession="SRS5829715">
      <IDENTIFIERS>
        <PRIMARY_ID>SRS5829715</PRIMARY_ID>
        <SUBMITTER_ID namespace="pda|bettinaglasl">BPA_36405</SUBMITTER_ID>
      </IDENTIFIERS>
    </SAMPLE_DESCRIPTOR>
    <LIBRARY_DESCRIPTOR>
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      <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
      <LIBRARY_SOURCE>METAGENOMIC</LIBRARY_SOURCE>
      <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
      <LIBRARY_LAYOUT>
        <PAIRED/>
      </LIBRARY_LAYOUT>
    </LIBRARY_DESCRIPTOR>
  </DESIGN>
  <PLATFORM>
    <ILLUMINA>
      <INSTRUMENT_MODEL>Illumina HiSeq 2500</INSTRUMENT_MODEL>
    </ILLUMINA>
  </PLATFORM>
  <EXPERIMENT_LINKS>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-SAMPLE</DB>
        <ID>SRS5829715</ID>
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    <EXPERIMENT_LINK>
      <XREF_LINK>
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        <ID>SRA1012330</ID>
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    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-FASTQ-FILES</DB>
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    <EXPERIMENT_LINK>
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  <EXPERIMENT_ATTRIBUTES>
    <EXPERIMENT_ATTRIBUTE>
      <TAG>ENA-STATUS-ID</TAG>
      <VALUE>4</VALUE>
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</EXPERIMENT>
</EXPERIMENT_SET>

Metadata as EBI XML

<EXPERIMENT_SET>
<EXPERIMENT accession="SRX7371532" alias="36406" center_name="SUB6659197" broker_name="NCBI">
  <IDENTIFIERS>
    <PRIMARY_ID>SRX7371532</PRIMARY_ID>
    <SUBMITTER_ID namespace="SUB6659197">36406</SUBMITTER_ID>
  </IDENTIFIERS>
  <TITLE>metagenome of coral reef microbiome: sponge tissue</TITLE>
  <STUDY_REF accession="SRP237667">
    <IDENTIFIERS>
      <PRIMARY_ID>SRP237667</PRIMARY_ID>
      <EXTERNAL_ID namespace="BioProject">PRJNA594068</EXTERNAL_ID>
    </IDENTIFIERS>
  </STUDY_REF>
  <DESIGN>
    <DESIGN_DESCRIPTION>Nextera XT Library Preparation Kit</DESIGN_DESCRIPTION>
    <SAMPLE_DESCRIPTOR accession="SRS5829716">
      <IDENTIFIERS>
        <PRIMARY_ID>SRS5829716</PRIMARY_ID>
        <SUBMITTER_ID namespace="pda|bettinaglasl">BPA_36406</SUBMITTER_ID>
      </IDENTIFIERS>
    </SAMPLE_DESCRIPTOR>
    <LIBRARY_DESCRIPTOR>
      <LIBRARY_NAME>36406</LIBRARY_NAME>
      <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
      <LIBRARY_SOURCE>METAGENOMIC</LIBRARY_SOURCE>
      <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
      <LIBRARY_LAYOUT>
        <PAIRED/>
      </LIBRARY_LAYOUT>
    </LIBRARY_DESCRIPTOR>
  </DESIGN>
  <PLATFORM>
    <ILLUMINA>
      <INSTRUMENT_MODEL>Illumina HiSeq 2500</INSTRUMENT_MODEL>
    </ILLUMINA>
  </PLATFORM>
  <EXPERIMENT_LINKS>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-SAMPLE</DB>
        <ID>SRS5829716</ID>
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    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-SUBMISSION</DB>
        <ID>SRA1012330</ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-FASTQ-FILES</DB>
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      </XREF_LINK>
    </EXPERIMENT_LINK>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-SUBMITTED-FILES</DB>
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  <EXPERIMENT_ATTRIBUTES>
    <EXPERIMENT_ATTRIBUTE>
      <TAG>ENA-STATUS-ID</TAG>
      <VALUE>4</VALUE>
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</EXPERIMENT>
</EXPERIMENT_SET>