Genome sc|0005388

Genomics

Accession

NCBI Assembly:GCA_004195035.1

Type

Metagenome-Assembled Genome (MAG)

Estimated Quality Metrics

• Completeness: 95.3%
• Contamination: 1.9%
• Quality: 85.8

Ribosomal and transfer RNA genes

• 2 16S rRNAs (up to 100.0%)
• 1 23S rRNA (up to 100.0%)
• tRNAs for 21 amino acids

Sequencing depth

318.0 ×

Source

• BioSample: SAMN10849878

Other features

• G+C Content: 37.35%
• Coding Density: 89.64%
• Codon Table: 11
• N50: 318,008 bp
• Contigs: 7
• Largest Contig: 877,655 bp
• Assembly Length: 1,873,120 bp
• Ambiguous Assembly Fraction: 0.0%

Automated checks

Complete

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Last modified about 1 month ago

Sample Metadata

BioSample entries

• BioSample: SAMN10849878

Date

Collection Date: 2016-07/2017-08

Location

Lat Lon: 23° 3′ N, 113° 10′ 12″ E

View map of sampling locations

Toponym

Geo Loc Name: China:Sun Yat-sen University,Guangzhou

Environment

Sample Type: metagenomic assembly

Isolation Source: acid mine drainage

Other

Not detected

Package

Not detected

All retrieved samples

• SAMN10849878: Microbe sample from Candidatus Acidulodesulfobacterium ferriphilum AP3

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Metadata retrieved about 1 month ago