Genome sc|0005394


Database

NCBI Assembly

Accession

GCA_028066695.1

Genomics

Accession
NCBI Assembly:GCA_028066695.1
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
  • Completeness: 90.2%
  • Contamination: 0.61%
  • Quality: 87.15
Ribosomal and transfer RNA genes
  • 1 16S rRNA (up to 100.0%)
  • 1 23S rRNA (up to 100.0%)
  • tRNAs for 20 amino acids
Sequencing depth
30.013475 ×
Source
Other features
  • G+C Content: 64.12%
  • Coding Density: 93.84%
  • Codon Table: 11
  • N50: 39,094 bp
  • Contigs: 89
  • Largest Contig: 91,315 bp
  • Assembly Length: 2,081,903 bp
  • Ambiguous Assembly Fraction: 0.29%
Automated checks
Complete

Last modified 29 days ago

Sample Metadata

BioSample entries
Date
Collection Date: 2019-11 • 2011-10-08
Location
Lat Lon: 18° 22′ 12″ S, 146° 18′ E
Geographic Location Latitude: 18° 22′ 7.6″ N
Geographic Location Longitude: 146° 17′ 60″ E
View map of sampling locations
Toponym
Geo Loc Name: Australia: Great Barrier Reef
Geographic Location Country And Or Sea: Australia
Environment
Sample Type: metagenomic assembly • 18.37 S 146.30 E
Isolation Source: sponge tissue
Environment Biome: marine coral reef biome
Environment Feature: marine benthic feature
Other
Host: Ianthella basta
Package
Ena Checklist: ERC000013
All retrieved samples

Metadata retrieved 29 days ago

Sequencing Experiments

Illumina MiSeq paired end sequencing
Illumina MiSeq paired end sequencing
Illumina HiSeq 2000 paired end sequencing


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