BioSample Accession(s)

SAMN26001860

lineage

GTDB taxonomy: d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__JABSOH01;f__;g__;s__

collection_date

2019-11

organism

Alphaproteobacteria bacterium

metagenomic

1

reads

SRR18090833

derived-from

This BioSample is a metagenomic assembly obtained from the sponge metagenome BioSample: SAMN26001782

sample_type

18.37 S 146.30 E

From metagenome

IB1_deep

environmental-sample

1

metagenome-source

sponge metagenome

isolate

IB1_deep_metabat_bins_sens.tsv.002

NCBI submission package

Microbe.1.0

host

Ianthella basta

geo_loc_name

Australia: Great Barrier Reef

lat_lon

18.37 S 146.30 E

isolation_source

sponge tissue

sample-type

metagenomic assembly

BioSampleModel

Microbe, viral or environmental

ENA-FIRST-PUBLIC

2022-12-13

ENA-LAST-UPDATE

2022-12-13

BioSample Accession(s)

SAMN26001782, SRS12062513

collection_date

2019-11

INSDC secondary accession

SRS12062513

NCBI submission package

Metagenome.environmental.1.0

organism

sponge metagenome

Sample

IB_1_deep

host

Ianthella basta

geo_loc_name

Australia: Great Barrier Reef

lat_lon

18.37 S 146.30 E

isolation_source

sponge tissue

BioSampleModel

Metagenome or environmental

ENA-FIRST-PUBLIC

2022-12-13

ENA-LAST-UPDATE

2022-12-13

Metadata as EBI XML

<EXPERIMENT_SET>
<EXPERIMENT accession="SRX14241880" alias="BBG6535_S120" center_name="SUB11112285" broker_name="NCBI">
  <IDENTIFIERS>
    <PRIMARY_ID>SRX14241880</PRIMARY_ID>
    <SUBMITTER_ID namespace="SUB11112285">BBG6535_S120</SUBMITTER_ID>
  </IDENTIFIERS>
  <TITLE>IB1_deep</TITLE>
  <STUDY_REF accession="SRP360811">
    <IDENTIFIERS>
      <PRIMARY_ID>SRP360811</PRIMARY_ID>
      <EXTERNAL_ID namespace="BioProject">PRJNA807825</EXTERNAL_ID>
    </IDENTIFIERS>
  </STUDY_REF>
  <DESIGN>
    <DESIGN_DESCRIPTION>Approximately 20 Gb data generated</DESIGN_DESCRIPTION>
    <SAMPLE_DESCRIPTOR accession="SRS12062513">
      <IDENTIFIERS>
        <PRIMARY_ID>SRS12062513</PRIMARY_ID>
        <EXTERNAL_ID namespace="BioSample">SAMN26001782</EXTERNAL_ID>
      </IDENTIFIERS>
    </SAMPLE_DESCRIPTOR>
    <LIBRARY_DESCRIPTOR>
      <LIBRARY_NAME>BBG6535_S120</LIBRARY_NAME>
      <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
      <LIBRARY_SOURCE>METAGENOMIC</LIBRARY_SOURCE>
      <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
      <LIBRARY_LAYOUT>
        <PAIRED/>
      </LIBRARY_LAYOUT>
    </LIBRARY_DESCRIPTOR>
  </DESIGN>
  <PLATFORM>
    <ILLUMINA>
      <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL>
    </ILLUMINA>
  </PLATFORM>
  <EXPERIMENT_LINKS>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-SAMPLE</DB>
        <ID>SRS12062513</ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-SUBMISSION</DB>
        <ID>SRA1375453</ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-FASTQ-FILES</DB>
        <ID><![CDATA[https://www.ebi.ac.uk/ena/portal/api/filereport?accession=SRX14241880&result=read_run&fields=run_accession,fastq_ftp,fastq_md5,fastq_bytes]]></ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-SUBMITTED-FILES</DB>
        <ID><![CDATA[https://www.ebi.ac.uk/ena/portal/api/filereport?accession=SRX14241880&result=read_run&fields=run_accession,submitted_ftp,submitted_md5,submitted_bytes,submitted_format]]></ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
  </EXPERIMENT_LINKS>
  <EXPERIMENT_ATTRIBUTES>
    <EXPERIMENT_ATTRIBUTE>
      <TAG>ENA-STATUS-ID</TAG>
      <VALUE>4</VALUE>
    </EXPERIMENT_ATTRIBUTE>
  </EXPERIMENT_ATTRIBUTES>
</EXPERIMENT>
</EXPERIMENT_SET>