Trichonympha acuta ectosymbiont "Ca. Termitispirillum cryptocercusi"

BioSample Accession(s)

SAMD01600362, ERS28142409

collection_date

2022

metagenome_source

protist metagenome

organism

Deferribacterales bacterium

env_broad_scale

missing

locus_tag_prefix

CpT324

env_local_scale

missing

isolate

CpT32-4

NCBI submission package

MIMAG.host-associated.6.0

derived_from

This biosample is a metagenomic assembly obtained from single protist cell from termite gut BioSample:SAMD01599353

geo_loc_name

USA:Georgia

env_medium

missing

lat_lon

missing

isolation_source

single cell of protist host amplifed by MDA from Cryptocercus punctulatus gut

sample_name

CpT32-4_assembly

BioSampleModel

MIMAG.host-associated

ENA-FIRST-PUBLIC

2025-11-05

ENA-LAST-UPDATE

2025-11-04

Trichonympha acuta ectosymbiont "Ca. Termitispirillum cryptocercusi"

BioSample Accession(s)

SAMD01599353, SRS26986896

collection_date

2022

isolate

CpT32

INSDC secondary accession

SRS26986896

NCBI submission package

Generic.1.0

organism

protist metagenome

host

Trichonympha acuta

geo_loc_name

USA:Georgia

lat_lon

missing

sample_type

metagenomic reads

isolation_source

hindgut of Cryptocercus punctulatus

sample_name

CpT32_rawread

BioSampleModel

Generic

ENA-FIRST-PUBLIC

2025-11-04

ENA-LAST-UPDATE

2025-11-05

Metadata as EBI XML

<EXPERIMENT_SET>
<EXPERIMENT accession="DRX688554" alias="DRX688554" center_name="Institute of Science Tokyo" broker_name="DDBJ">
  <IDENTIFIERS>
    <PRIMARY_ID>DRX688554</PRIMARY_ID>
    <SUBMITTER_ID namespace="Institute of Science Tokyo">DRX688554</SUBMITTER_ID>
  </IDENTIFIERS>
  <TITLE>Illumina MiSeq paired end sequencing of SAMD01599353</TITLE>
  <STUDY_REF accession="SRP640747" refname="PRJDB20420">
    <IDENTIFIERS>
      <PRIMARY_ID>SRP640747</PRIMARY_ID>
      <EXTERNAL_ID namespace="BioProject">PRJDB20420</EXTERNAL_ID>
    </IDENTIFIERS>
  </STUDY_REF>
  <DESIGN>
    <DESIGN_DESCRIPTION/>
    <SAMPLE_DESCRIPTOR accession="SRS26986896" refname="SAMD01599353">
      <IDENTIFIERS>
        <PRIMARY_ID>SRS26986896</PRIMARY_ID>
        <EXTERNAL_ID namespace="BioSample">SAMD01599353</EXTERNAL_ID>
      </IDENTIFIERS>
    </SAMPLE_DESCRIPTOR>
    <LIBRARY_DESCRIPTOR>
      <LIBRARY_NAME>CpT32_rawread_illumina</LIBRARY_NAME>
      <LIBRARY_STRATEGY>WGA</LIBRARY_STRATEGY>
      <LIBRARY_SOURCE>METAGENOMIC</LIBRARY_SOURCE>
      <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
      <LIBRARY_LAYOUT>
        <PAIRED/>
      </LIBRARY_LAYOUT>
      <LIBRARY_CONSTRUCTION_PROTOCOL/>
    </LIBRARY_DESCRIPTOR>
  </DESIGN>
  <PLATFORM>
    <ILLUMINA>
      <INSTRUMENT_MODEL>Illumina MiSeq</INSTRUMENT_MODEL>
    </ILLUMINA>
  </PLATFORM>
  <EXPERIMENT_LINKS>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-SAMPLE</DB>
        <ID>SRS26986896</ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-SUBMISSION</DB>
        <ID>DRA021790</ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-FASTQ-FILES</DB>
        <ID><![CDATA[https://www.ebi.ac.uk/ena/portal/api/filereport?accession=DRX688554&result=read_run&fields=run_accession,fastq_ftp,fastq_md5,fastq_bytes]]></ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-SUBMITTED-FILES</DB>
        <ID><![CDATA[https://www.ebi.ac.uk/ena/portal/api/filereport?accession=DRX688554&result=read_run&fields=run_accession,submitted_ftp,submitted_md5,submitted_bytes,submitted_format]]></ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
  </EXPERIMENT_LINKS>
  <EXPERIMENT_ATTRIBUTES>
    <EXPERIMENT_ATTRIBUTE>
      <TAG>ENA-STATUS-ID</TAG>
      <VALUE>4</VALUE>
    </EXPERIMENT_ATTRIBUTE>
  </EXPERIMENT_ATTRIBUTES>
</EXPERIMENT>
</EXPERIMENT_SET>

Metadata as EBI XML

<EXPERIMENT_SET>
<EXPERIMENT accession="DRX687867" alias="DRX687867" center_name="Institute of Science Tokyo" broker_name="DDBJ">
  <IDENTIFIERS>
    <PRIMARY_ID>DRX687867</PRIMARY_ID>
    <SUBMITTER_ID namespace="Institute of Science Tokyo">DRX687867</SUBMITTER_ID>
  </IDENTIFIERS>
  <TITLE>MinION sequencing of SAMD01599353</TITLE>
  <STUDY_REF accession="SRP640747" refname="PRJDB20420">
    <IDENTIFIERS>
      <PRIMARY_ID>SRP640747</PRIMARY_ID>
      <EXTERNAL_ID namespace="BioProject">PRJDB20420</EXTERNAL_ID>
    </IDENTIFIERS>
  </STUDY_REF>
  <DESIGN>
    <DESIGN_DESCRIPTION/>
    <SAMPLE_DESCRIPTOR accession="SRS26986896" refname="SAMD01599353">
      <IDENTIFIERS>
        <PRIMARY_ID>SRS26986896</PRIMARY_ID>
        <EXTERNAL_ID namespace="BioSample">SAMD01599353</EXTERNAL_ID>
      </IDENTIFIERS>
    </SAMPLE_DESCRIPTOR>
    <LIBRARY_DESCRIPTOR>
      <LIBRARY_NAME>CpT32_rawread_ont</LIBRARY_NAME>
      <LIBRARY_STRATEGY>WGA</LIBRARY_STRATEGY>
      <LIBRARY_SOURCE>METAGENOMIC</LIBRARY_SOURCE>
      <LIBRARY_SELECTION>size fractionation</LIBRARY_SELECTION>
      <LIBRARY_LAYOUT>
        <SINGLE/>
      </LIBRARY_LAYOUT>
      <LIBRARY_CONSTRUCTION_PROTOCOL/>
    </LIBRARY_DESCRIPTOR>
  </DESIGN>
  <PLATFORM>
    <OXFORD_NANOPORE>
      <INSTRUMENT_MODEL>MinION</INSTRUMENT_MODEL>
    </OXFORD_NANOPORE>
  </PLATFORM>
  <EXPERIMENT_LINKS>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-SAMPLE</DB>
        <ID>SRS26986896</ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-SUBMISSION</DB>
        <ID>DRA021752</ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-FASTQ-FILES</DB>
        <ID><![CDATA[https://www.ebi.ac.uk/ena/portal/api/filereport?accession=DRX687867&result=read_run&fields=run_accession,fastq_ftp,fastq_md5,fastq_bytes]]></ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-SUBMITTED-FILES</DB>
        <ID><![CDATA[https://www.ebi.ac.uk/ena/portal/api/filereport?accession=DRX687867&result=read_run&fields=run_accession,submitted_ftp,submitted_md5,submitted_bytes,submitted_format]]></ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
  </EXPERIMENT_LINKS>
  <EXPERIMENT_ATTRIBUTES>
    <EXPERIMENT_ATTRIBUTE>
      <TAG>ENA-STATUS-ID</TAG>
      <VALUE>4</VALUE>
    </EXPERIMENT_ATTRIBUTE>
  </EXPERIMENT_ATTRIBUTES>
</EXPERIMENT>
</EXPERIMENT_SET>