Keywords: GSC:MIxS;MIGS:6.0

BioSample Accession(s)

SAMN43225616, ERS27372703

strain

PAAF003

collection_date

2019-12

isol_growth_condt

36662226

ref_biomaterial

not applicable

organism

Microbulbifer sp. PAAF003

env_broad_scale

marine water body [ENVO:0000199]

env_local_scale

marine reef biome [ENVO:01000029]

NCBI submission package

MIGS.ba.water.6.0

depth

30-150 meters

num_replicons

not applicable

geo_loc_name

USA: Florida

env_medium

coastal sea water [ENVO:00002150]

lat_lon

24.5551 N 81.7800 W

BioSampleModel

MIGS.ba

ENA-FIRST-PUBLIC

2025-08-15

ENA-LAST-UPDATE

2025-08-15

Metadata as EBI XML

<EXPERIMENT_SET>
<EXPERIMENT accession="SRX31075624" alias="Plasmidsaurus_PAAF003.1" center_name="SUB15773504" broker_name="NCBI">
  <IDENTIFIERS>
    <PRIMARY_ID>SRX31075624</PRIMARY_ID>
    <SUBMITTER_ID namespace="SUB15773504">Plasmidsaurus_PAAF003.1</SUBMITTER_ID>
  </IDENTIFIERS>
  <TITLE>Raw Reads of strain PAAF003</TITLE>
  <STUDY_REF accession="SRP644650">
    <IDENTIFIERS>
      <PRIMARY_ID>SRP644650</PRIMARY_ID>
      <EXTERNAL_ID namespace="BioProject">PRJNA1148949</EXTERNAL_ID>
    </IDENTIFIERS>
  </STUDY_REF>
  <DESIGN>
    <DESIGN_DESCRIPTION>Raw reads and sequences were obtained through Plasmidsaurus Whole Genome Sequencing services</DESIGN_DESCRIPTION>
    <SAMPLE_DESCRIPTOR accession="SRS27064583">
      <IDENTIFIERS>
        <PRIMARY_ID>SRS27064583</PRIMARY_ID>
        <EXTERNAL_ID namespace="BioSample">SAMN43225616</EXTERNAL_ID>
      </IDENTIFIERS>
    </SAMPLE_DESCRIPTOR>
    <LIBRARY_DESCRIPTOR>
      <LIBRARY_NAME>Plasmidsaurus_PAAF003.1</LIBRARY_NAME>
      <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
      <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
      <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
      <LIBRARY_LAYOUT>
        <SINGLE/>
      </LIBRARY_LAYOUT>
    </LIBRARY_DESCRIPTOR>
  </DESIGN>
  <PLATFORM>
    <OXFORD_NANOPORE>
      <INSTRUMENT_MODEL>MinION</INSTRUMENT_MODEL>
    </OXFORD_NANOPORE>
  </PLATFORM>
  <EXPERIMENT_LINKS>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-SAMPLE</DB>
        <ID>SRS27064583</ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-SUBMISSION</DB>
        <ID>SRA2276450</ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-FASTQ-FILES</DB>
        <ID><![CDATA[https://www.ebi.ac.uk/ena/portal/api/filereport?accession=SRX31075624&result=read_run&fields=run_accession,fastq_ftp,fastq_md5,fastq_bytes]]></ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-SUBMITTED-FILES</DB>
        <ID><![CDATA[https://www.ebi.ac.uk/ena/portal/api/filereport?accession=SRX31075624&result=read_run&fields=run_accession,submitted_ftp,submitted_md5,submitted_bytes,submitted_format]]></ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
  </EXPERIMENT_LINKS>
  <EXPERIMENT_ATTRIBUTES>
    <EXPERIMENT_ATTRIBUTE>
      <TAG>ENA-STATUS-ID</TAG>
      <VALUE>4</VALUE>
    </EXPERIMENT_ATTRIBUTE>
  </EXPERIMENT_ATTRIBUTES>
</EXPERIMENT>
</EXPERIMENT_SET>