Genome sc|0005429

Genomics

Accession

NCBI Assembly:GCF_003966565.1

Cultures

Strain sc|0040544

Type

Isolate Genome

Estimated Quality Metrics

• Completeness: 99.1%
• Contamination: 1.9%
• Quality: 89.6

Ribosomal and transfer RNA genes

• 2 16S rRNAs (up to 100.0%)
• 2 23S rRNAs (up to 100.0%)
• tRNAs for 20 amino acids

Sequencing depth

232.0 ×

Source

• BioSample: SAMD00126348

Other features

• G+C Content: 62.44%
• Coding Density: 92.69%
• Codon Table: 11
• N50: 2,559,497 bp
• Contigs: 3
• Largest Contig: 2,559,497 bp
• Assembly Length: 2,811,460 bp
• Ambiguous Assembly Fraction: 0.0%

Automated checks

Complete

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Last modified about 1 month ago

Sample Metadata

BioSample entries

• BioSample: SAMD00126348

Date

Collection Date: 2016-05-13

Location

Lat Lon: 42° 57′ 36″ N, 141° 9′ 36″ E

View map of sampling locations

Toponym

Geo Loc Name: Japan:Hokkaido, Sapporo, Jozankei hot spring

Environment

Env Local Scale: hot spring

Other

Not detected

Package

Ncbi Submission Package: MIGS.ba.6.0

Biosamplemodel: MIGS.ba

All retrieved samples

• SAMD00126348: Sterolibacteriaceae bacterium J5B

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Metadata retrieved about 1 month ago