Genome sc|0005454


Name

Not registered

Database

NCBI Assembly

Accession

SRA:SRR31976005, BioProject:PRJNA1208428, 16S rRNA:PQ858246

Marked for deletion

This genome is currently not registered as the nomenclatural type or the reference genome of any names in the Registry, and it will be purged from the database soon unless it is linked to a name

Genomics

Accession
NCBI Assembly:SRA:SRR31976005BioProject:PRJNA120842816S rRNA:PQ858246
Cultures
Strain sc|0040603
Type
Isolate Genome
Estimated Quality Metrics
  • Completeness: 99.94%
  • Contamination: 0.91%
  • Quality: 95.39
Sequencing depth
269.43 ×
Source
Other features
  • G+C Content: 69.91%
Submitter comments
The bacterial draft genome was assembled from optimized sequencing reads (obtained via next-generation sequencing) using short-read assemblers such as SOAPdenovo2 or SPAdes. Multiple K‑mer values were tested during the assembly process to generate an optimal set of contigs. Subsequently, the reads were mapped back to the contigs, and scaffold construction was performed by leveraging paired‑end and overlap information from the reads, followed by local assembly and refinement. Finally, the genome completeness and potential contamination were assessed using CheckM.
Automated checks
Failed: Cannot find ncbi:assembly:SRA:SRR31976005, BioProject:PRJNA1208428, 16S rRNA:PQ858246

Last modified 15 days ago


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