Genome sc|0005455


Name

Not registered

Database

NCBI Assembly

Accession

PQ858246.2

Marked for deletion

This genome is currently not registered as the nomenclatural type or the reference genome of any names in the Registry, and it will be purged from the database soon unless it is linked to a name

Genomics

Accession
NCBI Assembly:PQ858246.2
Cultures
Strain sc|0040609
Type
Isolate Genome
Estimated Quality Metrics
  • Completeness: 99.94%
  • Contamination: 0.91%
  • Quality: 95.39
Sequencing depth
269.43 ×
Source
Other features
  • G+C Content: 69.91%
Submitter comments
The bacterial draft genome was assembled from optimized sequencing reads (obtained via next-generation sequencing) using short-read assemblers such as SOAPdenovo2 or SPAdes. Multiple K‑mer values were tested during the assembly process to generate an optimal set of contigs. Subsequently, the reads were mapped back to the contigs, and scaffold construction was performed by leveraging paired‑end and overlap information from the reads, followed by local assembly and refinement. Finally, the genome completeness and potential contamination were assessed using CheckM.
Automated checks
Failed: Cannot find ncbi:assembly:PQ858246.2

Last modified 6 days ago

Sample Metadata

BioSample entries
Date
Collection Date: 2023-11-18
Location
Lat Lon: 10° S, 90° E
View map of sampling locations
Toponym
Geo Loc Name: Indian Ocean
Environment
Sample Type: Single pure bacterial culture
Isolation Source: from deep-sea water collected from the Eastern Indian Ocean at a depth of 5318 meters.
Other
Depth: 5318
Package
Not detected
All retrieved samples

Metadata retrieved 15 days ago


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