JSON

Genome sc|0005471

Name

Not registered

Database

INSDC Nucleotide

Accession

GCA_026003015.1

Marked for deletion

This genome is currently not registered as the nomenclatural type or the reference genome of any names in the Registry, and it will be purged from the database soon unless it is linked to a name

Genomics

Accession
INSDC Nucleotide:GCA_026003015.1
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
  • Completeness: 90.58%
  • Contamination: 0.63%
  • Quality: 87.43
Ribosomal and transfer RNA genes
  • 1 16S rRNA (up to 98.6%)
  • 1 23S rRNA (up to 100.0%)
  • tRNAs for 18 amino acids
Sequencing depth
31.0 ×
Source
Other features
  • G+C Content: 73.0%
Submitter comments
使用 CheckM2 v1.0.2 评估宏基因组组装基因组 (MAG) 的质量。使用 barrnap v0.9 (https://github.com/tseemann/barrnap) 鉴定每个 MAG 中潜在的 5S、16S 和 23S rRNA 基因。使用 Prokka v1.14 评估基因组中潜在的 tRNA 基因数量。
Automated checks
Failed: Cannot find ncbi:nuccore:GCA_026003015.1
Edit genome data
Last modified 18 days ago

Sample Metadata

BioSample entries
Date
Collection Date: 2012-06-11
Location
Lat Lon: 34° 48′ 14″ N, 139° 3′ 50″ E
View map of sampling locations
Toponym
Geo Loc Name: Japan:Shizuoka, Higashi-izu, Arayu
Environment
Env Material: thermophilic sediment
Sample Type: metagenomic assembly
Env Biome: freshwater biome
Isolation Source: sediments collected from the Katase hot spring field
Other
Depth: 0
Package
Not detected
All retrieved samples
Metadata retrieved 18 days ago


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