JSON

Genome sc|0005472

Name

Not registered

Database

NCBI Assembly

Accession

GCA_026003015.1

Marked for deletion

This genome is currently not registered as the nomenclatural type or the reference genome of any names in the Registry, and it will be purged from the database soon unless it is linked to a name

Genomics

Accession
NCBI Assembly:GCA_026003015.1
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
  • Completeness: 90.58% (automated estimate: 87.7%)
  • Contamination: 0.63% (automated estimate: 0.0%)
  • Quality: 87.43 (automated estimate: 87.7)
Ribosomal and transfer RNA genes
  • 1 16S rRNA (up to 98.6%) (automated estimate: 1)
  • 1 23S rRNA (up to 100.0%) (automated estimate: 1)
  • tRNAs for 20 amino acids (automated estimate: 21)
Sequencing depth
31.0 ×
Source
Other features
  • G+C Content: 73.0% (automated estimate: 72.95%)
  • Coding Density: 91.55%
  • Codon Table: 11
  • N50: 1,409,366 bp
  • Contigs: 4
  • Largest Contig: 1,409,366 bp
  • Assembly Length: 2,202,182 bp
  • Ambiguous Assembly Fraction: 0.0%
Automated checks
Complete
Edit genome data
Last modified 2 months ago

Sample Metadata

BioSample entries
Date
Collection Date: 2018-03
Location
Lat Lon: 24° 55′ 12″ N, 98° 20′ 24″ E
View map of sampling locations
Toponym
Geo Loc Name: China: Tengchong county, Yunnan, HHBFW-2
Environment
Sample Type: metagenomic assembly
Isolation Source: Hot spring sediment
Env Broad Scale: Hot spring
Env Local Scale: Hot spring sediment
Env Medium: Hot spring sediment
Other
Depth: Surface
Package
Not detected
Additional Accessions
SAMN35165523 Append as BioSamples
All retrieved samples
Metadata retrieved 2 months ago


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