JSON

Genome sc|0005472

Name

Not registered

Database

NCBI Assembly

Accession

GCA_026003015.1

Marked for deletion

This genome is currently not registered as the nomenclatural type or the reference genome of any names in the Registry, and it will be purged from the database soon unless it is linked to a name

Genomics

Accession
NCBI Assembly:GCA_026003015.1
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
  • Completeness: 90.58% (automated estimate: 87.7%)
  • Contamination: 0.63% (automated estimate: 0.0%)
  • Quality: 87.43 (automated estimate: 87.7)
Ribosomal and transfer RNA genes
  • 1 16S rRNA (up to 98.6%) (automated estimate: 1)
  • 1 23S rRNA (up to 100.0%) (automated estimate: 1)
  • tRNAs for 20 amino acids (automated estimate: 21)
Sequencing depth
31.0 ×
Source
Other features
  • G+C Content: 73.0% (automated estimate: 72.95%)
  • Coding Density: 91.55%
  • Codon Table: 11
  • N50: 1,409,366 bp
  • Contigs: 4
  • Largest Contig: 1,409,366 bp
  • Assembly Length: 2,202,182 bp
  • Ambiguous Assembly Fraction: 0.0%
Automated checks
Complete
Edit genome data
Last modified 18 days ago

Sample Metadata

BioSample entries
Date
Collection Date: 2012-06-11
Location
Lat Lon: 34° 48′ 14″ N, 139° 3′ 50″ E
View map of sampling locations
Toponym
Geo Loc Name: Japan:Shizuoka, Higashi-izu, Arayu
Environment
Env Broad Scale: freshwater biome
Env Local Scale: neutral hot spring
Env Medium: thermophilic sediment
Other
Depth: 0
Package
Not detected
All retrieved samples
Metadata retrieved 18 days ago

Sequencing Experiments

DRR290133


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