Metagenome-assembled Genome sample from Candidatus Solincola sp.

BioSample Accession(s)

SAMN51433446, ERS28052025

collection_date

2018-08-20

depth

6 feet

derived-from

SRR10420990

elev

NA

env_broad_scale

Hot spring

env_local_scale

Sediment

env_medium

Sediment

environmental-sample

1

geo_loc_name

India

isolate

MPNR_HS_01

isolation_source

hot spring sediment

lat_lon

22.799444 N 73.460278 E

metagenome-source

hot springs metagenome

metagenomic

1

sample-type

metagenomic assembly

BioSample Accession(s)

SRS5629177, SAMN13243624

collection date

2018-08-20

geo loc name

India: Tuwa Hot Spring

isolation source

hot spring sediment

lat lon

22.799444 N 73.460278 E

Metadata as EBI XML

<EXPERIMENT_SET>
<EXPERIMENT accession="SRX12789583" alias="Tuwa" center_name="SUB10572896" broker_name="NCBI">
  <IDENTIFIERS>
    <PRIMARY_ID>SRX12789583</PRIMARY_ID>
    <SUBMITTER_ID namespace="SUB10572896">Tuwa</SUBMITTER_ID>
  </IDENTIFIERS>
  <TITLE>Tuwa hot spring metagenome</TITLE>
  <STUDY_REF accession="SRP229332">
    <IDENTIFIERS>
      <PRIMARY_ID>SRP229332</PRIMARY_ID>
      <EXTERNAL_ID namespace="BioProject">PRJNA588442</EXTERNAL_ID>
    </IDENTIFIERS>
  </STUDY_REF>
  <DESIGN>
    <DESIGN_DESCRIPTION>The metagenomic sequence data were generated using Illumina Hiseq 4000 instruments</DESIGN_DESCRIPTION>
    <SAMPLE_DESCRIPTOR accession="SRS5629177">
      <IDENTIFIERS>
        <PRIMARY_ID>SRS5629177</PRIMARY_ID>
        <EXTERNAL_ID namespace="BioSample">SAMN13243624</EXTERNAL_ID>
      </IDENTIFIERS>
    </SAMPLE_DESCRIPTOR>
    <LIBRARY_DESCRIPTOR>
      <LIBRARY_NAME>Tuwa</LIBRARY_NAME>
      <LIBRARY_STRATEGY>OTHER</LIBRARY_STRATEGY>
      <LIBRARY_SOURCE>METAGENOMIC</LIBRARY_SOURCE>
      <LIBRARY_SELECTION>other</LIBRARY_SELECTION>
      <LIBRARY_LAYOUT>
        <PAIRED/>
      </LIBRARY_LAYOUT>
    </LIBRARY_DESCRIPTOR>
  </DESIGN>
  <PLATFORM>
    <ILLUMINA>
      <INSTRUMENT_MODEL>Illumina HiSeq 4000</INSTRUMENT_MODEL>
    </ILLUMINA>
  </PLATFORM>
  <EXPERIMENT_LINKS>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-SAMPLE</DB>
        <ID>SRS5629177</ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-SUBMISSION</DB>
        <ID>SRA1318218</ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-FASTQ-FILES</DB>
        <ID><![CDATA[https://www.ebi.ac.uk/ena/portal/api/filereport?accession=SRX12789583&result=read_run&fields=run_accession,fastq_ftp,fastq_md5,fastq_bytes]]></ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-SUBMITTED-FILES</DB>
        <ID><![CDATA[https://www.ebi.ac.uk/ena/portal/api/filereport?accession=SRX12789583&result=read_run&fields=run_accession,submitted_ftp,submitted_md5,submitted_bytes,submitted_format]]></ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
  </EXPERIMENT_LINKS>
  <EXPERIMENT_ATTRIBUTES>
    <EXPERIMENT_ATTRIBUTE>
      <TAG>ENA-STATUS-ID</TAG>
      <VALUE>4</VALUE>
    </EXPERIMENT_ATTRIBUTE>
  </EXPERIMENT_ATTRIBUTES>
</EXPERIMENT>
</EXPERIMENT_SET>

Metadata as EBI XML

<EXPERIMENT_SET>
<EXPERIMENT accession="SRX7119024" alias="Tuwa hot spring sediment" center_name="SUB6531032" broker_name="NCBI">
  <IDENTIFIERS>
    <PRIMARY_ID>SRX7119024</PRIMARY_ID>
    <SUBMITTER_ID namespace="SUB6531032">Tuwa hot spring sediment</SUBMITTER_ID>
  </IDENTIFIERS>
  <TITLE>Indian hot spring meta genome Raw sequence reads</TITLE>
  <STUDY_REF accession="SRP229332">
    <IDENTIFIERS>
      <PRIMARY_ID>SRP229332</PRIMARY_ID>
      <EXTERNAL_ID namespace="BioProject">PRJNA588442</EXTERNAL_ID>
    </IDENTIFIERS>
  </STUDY_REF>
  <DESIGN>
    <DESIGN_DESCRIPTION>Indian hot spring meta genome Raw sequence reads</DESIGN_DESCRIPTION>
    <SAMPLE_DESCRIPTOR accession="SRS5629177">
      <IDENTIFIERS>
        <PRIMARY_ID>SRS5629177</PRIMARY_ID>
        <EXTERNAL_ID namespace="BioSample">SAMN13243624</EXTERNAL_ID>
      </IDENTIFIERS>
    </SAMPLE_DESCRIPTOR>
    <LIBRARY_DESCRIPTOR>
      <LIBRARY_NAME>Tuwa hot spring sediment</LIBRARY_NAME>
      <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY>
      <LIBRARY_SOURCE>METAGENOMIC</LIBRARY_SOURCE>
      <LIBRARY_SELECTION>PCR</LIBRARY_SELECTION>
      <LIBRARY_LAYOUT>
        <PAIRED/>
      </LIBRARY_LAYOUT>
    </LIBRARY_DESCRIPTOR>
  </DESIGN>
  <PLATFORM>
    <ILLUMINA>
      <INSTRUMENT_MODEL>Illumina HiSeq 2500</INSTRUMENT_MODEL>
    </ILLUMINA>
  </PLATFORM>
  <EXPERIMENT_LINKS>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-SAMPLE</DB>
        <ID>SRS5629177</ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-SUBMISSION</DB>
        <ID>SRA993560</ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-FASTQ-FILES</DB>
        <ID><![CDATA[https://www.ebi.ac.uk/ena/portal/api/filereport?accession=SRX7119024&result=read_run&fields=run_accession,fastq_ftp,fastq_md5,fastq_bytes]]></ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-SUBMITTED-FILES</DB>
        <ID><![CDATA[https://www.ebi.ac.uk/ena/portal/api/filereport?accession=SRX7119024&result=read_run&fields=run_accession,submitted_ftp,submitted_md5,submitted_bytes,submitted_format]]></ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
  </EXPERIMENT_LINKS>
  <EXPERIMENT_ATTRIBUTES>
    <EXPERIMENT_ATTRIBUTE>
      <TAG>ENA-STATUS-ID</TAG>
      <VALUE>4</VALUE>
    </EXPERIMENT_ATTRIBUTE>
  </EXPERIMENT_ATTRIBUTES>
</EXPERIMENT>
</EXPERIMENT_SET>