JSON

Genome sc|0005587

Name

Not registered

Database

INSDC Nucleotide

Accession

JBOIDF000000000.1

Marked for deletion

This genome is currently not registered as the nomenclatural type or the reference genome of any names in the Registry, and it will be purged from the database soon unless it is linked to a name

Genomics

Accession
INSDC Nucleotide:JBOIDF000000000.1
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
  • Completeness: 99.1%
  • Contamination: 1.9%
  • Quality: 89.6
Ribosomal and transfer RNA genes
  • 1 16S rRNA (up to 100.0%)
  • 1 23S rRNA (up to 100.0%)
  • tRNAs for 19 amino acids
Source
Other features
  • G+C Content: 59.94%
  • Coding Density: 86.4%
  • Codon Table: 11
  • N50: 40,277 bp
  • Contigs: 130
  • Largest Contig: 133,518 bp
  • Assembly Length: 3,625,199 bp
  • Ambiguous Assembly Fraction: 0.039%
Automated checks
Complete
Edit genome data
Last modified 6 days ago

Sample Metadata

BioSample entries
Date
Collection Date: 2021-04-10
Location
Lat Lon: 37° 24′ 21″ S, 148° 12′ 40″ E
View map of sampling locations
Toponym
Geo Loc Name: Australia: Victoria
Environment
Env Broad Scale: Limestone cave [ENVO:01000359]
Env Local Scale: Shades of Death, Deep, sediment C
Env Medium: Soil [ENVO:00001998]
Other
Depth: 0-50
Package
Not detected
All retrieved samples
Metadata retrieved 6 days ago


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