Genome sc|0005627

Genomics

Accession

NCBI Assembly:GCA_001552015.1

Type

Enrichment Genome

Estimated Quality Metrics

• Completeness: 95.35%
• Contamination: 0.55%
• Quality: 92.6

Ribosomal and transfer RNA genes

• 1 16S rRNA (up to 100.0%)
• 1 23S rRNA (up to 100.0%)
• tRNAs for 20 amino acids

Source

• BioSample: SAMN03173949

Other features

• G+C Content: 24.24%
• Coding Density: 93.01%
• Codon Table: 11
• N50: 605,887 bp
• Contigs: 1
• Largest Contig: 605,887 bp
• Assembly Length: 605,887 bp
• Ambiguous Assembly Fraction: 0.0%

Submitter comments

Genome completeness and contamination were estimated using the CheckM2 v.1.1.0 general model. However, this sequence represents a closed, circular genome (Wurch et al., 2016).

Automated checks

Complete

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Last modified 3 months ago

Sample Metadata

BioSample entries

• BioSample: SAMN03173949

Date

Collection Date: 2012-06-16

Location

Lat Lon: 44° 43′ 23″ N, 110° 42′ 14″ W

View map of sampling locations

Toponym

Geo Loc Name: USA: Yellowstone National Park, Cistern Spring

Environment

Env Material: water and sediment

Env Biome: geothermal spring

Other

Host: Acidulobus

Depth: 5

Rel To Oxygen: anaerobe

Isol Growth Condt: Laboratory culture in Acidilobus medium at 80 C

Package

Not detected

All retrieved samples

• SAMN03173949: MIGS Cultured Archaeal sample of Candidatus Nanopusillus acidilobi in co-culture with Candidatus Acidilobus nanophilum

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Metadata retrieved 4 months ago