SeqCode Registry
cognitis nomina
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Genomes
sc|0005786
JSON
Genome sc|0005786
Name
Denitratimonas tolerans
Ts
Database
NCBI Assembly
Accession
GCA_037203605.1
Genomics
Accession
NCBI Assembly:
GCA_037203605.1
Cultures
Strain sc|0041710
Type
Isolate Genome
Estimated Quality Metrics
Completeness:
100.0%
Contamination:
0.9%
Quality:
95.5
Ribosomal and transfer RNA genes
1 16S rRNA (up to 100.0%)
1 23S rRNA (up to 100.0%)
tRNAs for 20 amino acids
Sequencing depth
200.0 ×
Source
BioSample: SAMN40348017
Other features
G+C Content:
68.33%
Coding Density:
90.48%
Codon Table:
11
N50:
179,365 bp
Contigs:
43
Largest Contig:
290,443 bp
Assembly Length:
3,101,810 bp
Ambiguous Assembly Fraction:
0.0%
Automated checks
Complete
Last modified
12 days ago
Sample Metadata
BioSample entries
BioSample: SAMN40348017
Date
Not detected
Location
Not detected
Toponym
Geo Loc Name:
South Korea:Daejeon
Environment
Sample Type:
pure culture
Isolation Source:
tannery wastewater
Other
Not detected
Package
Not detected
All retrieved samples
SAMN40348017
: Microbe sample from Denitratimonas tolerans
Metadata retrieved
12 days ago
© 2022-2026 The SeqCode Initiative
All information contributed to the SeqCode Registry is released under the terms of the
Creative Commons Attribution (CC BY) 4.0
license
Automated Estimates
×
This genome was automatically retrieved and processed using MiGA (The Microbial Genomes Atlas)
[1]
, and the estimate has not been overridden by the submitter.
Rodriguez-R et al, 2018, NAR.
DOI: 10.1093/nar/gky467
SAMN40348017
×
Metadata retrieved using the EBI BioSample API
BioSample Accession(s)
SAMN40348017, ERS18462589
collection_date
missing
geo_loc_name
South Korea:Daejeon
isolation_source
tannery wastewater
sample_type
pure culture
strain
KACC 17565
type-material
type strain of Denitratimonas tolerans
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Publications
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Subjects
seqco.de/r:cpzsb8s6