Genome sc|0005790

Genomics

Accession

INSDC Nucleotide:CP113000.1

Cultures

Strain sc|0041719

Type

Metagenome-Assembled Genome (MAG)

Estimated Quality Metrics

• Completeness: 100.0% (automated estimate: 88.7%)
• Contamination: 0.0% (automated estimate: 6.6%)
• Quality: 100.0 (automated estimate: 55.7)

Ribosomal and transfer RNA genes

• 1 16S rRNA (up to 100.0%) (automated estimate: 1)
• 1 23S rRNA (up to 100.0%) (automated estimate: 1)
• tRNAs for 21 amino acids (automated estimate: 20)

Sequencing depth

993.0 ×

Source

• SRA: JARDUI000000000
• SRA: JARDUJ000000000

Other features

• G+C Content: 44.11% (automated estimate: 44.11%)
• Coding Density: 84.12%
• Codon Table: 11
• N50: 3,300,546 bp
• Contigs: 1
• Largest Contig: 3,300,546 bp
• Assembly Length: 3,300,546 bp
• Ambiguous Assembly Fraction: 0.00033%

Automated checks

Complete

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Last modified 3 months ago

Sample Metadata

BioSample entries

• BioSample: SAMN31357436

Date

Collection Date: 1995

Location

Lat Lon: 35° N, 97° W

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Toponym

Geo Loc Name: USA: Oklahoma

Environment

Isolation Source: Contaminated sediments from an oil refinery in Oklahoma, USA (Nales et al., 1998; Bioremediat J 2). The site was described as being from a saturated, highly anaerobic zone that had been chronically exposed to hydrocarbons. Cultures have been maintained in anaerobic minimal medium ever since, and fed with benzene as their sole carbon and energy source.

Env Broad Scale: Groundwater aquifer [ENVO:00012408]

Env Local Scale: Oil-contaminated soil [ENVO:00002875], Aquifer [ENVO:00012408]

Env Medium: Oil-contaminated soil [ENVO:00002875], Anaerobic sediment [ENVO:00002045], Groundwater [ENVO:01001004]

Other

Depth: 30-70 cm

Package

Not detected

Additional Accessions

This biosample is a metagenomic assembly obtained from the enrichment culture of mixed prokaryotes sample SAMN31746485

All retrieved samples

• SAMN31357436: Desulfobacterota candidate ORM2a

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Metadata retrieved 3 months ago