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Genome sc|0005798

Name

Not registered

Database

NCBI Assembly

Accession

JBSYXB010000001,JBSYXB010000002,JBSYXB010000003,JBSYXB010000004,JBSYXB010000005,JBSYXB010000006,JBSYXB010000007,JBSYXB010000008,JBSYXB010000009,JBSYXB010000010,JBSYXB010000011,JBSYXB010000012,JBSYXB010000013,JBSYXB010000014,JBSYXB010000015,JBSYXB010000016,JBSYXB010000017,JBSYXB010000018,JBSYXB010000019,JBSYXB010000020,JBSYXB010000021,JBSYXB010000022,JBSYXB010000023

Marked for deletion

This genome is currently not registered as the nomenclatural type or the reference genome of any names in the Registry, and it will be purged from the database soon unless it is linked to a name

Genomics

Accession
NCBI Assembly:JBSYXB010000001•JBSYXB010000002•JBSYXB010000003•JBSYXB010000004•JBSYXB010000005•JBSYXB010000006•JBSYXB010000007•JBSYXB010000008•JBSYXB010000009•JBSYXB010000010•JBSYXB010000011•JBSYXB010000012•JBSYXB010000013•JBSYXB010000014•JBSYXB010000015•JBSYXB010000016•JBSYXB010000017•JBSYXB010000018•JBSYXB010000019•JBSYXB010000020•JBSYXB010000021•JBSYXB010000022•JBSYXB010000023
Cultures
Strain sc|0041720
Type
Isolate Genome
Estimated Quality Metrics
  • Completeness: 96.6%
  • Contamination: 0.2%
  • Quality: 95.6
Ribosomal and transfer RNA genes
  • 1 16S rRNA (up to 100.0%)
  • 2 23S rRNAs (up to 100.0%)
  • tRNAs for 20 amino acids
Sequencing depth
170.5 ×
Source
Other features
  • G+C Content: 72.5%
Submitter comments
Genome completeness was assessed using BUSCO v6.0.0 with the micrococcales_odb12 lineage dataset (504 single-copy orthologs) under prokaryotic genome mode. The results indicate a high-quality genome assembly with minimal redundancy. Additionally, strain DNPG3 exhibits the ability to degrade p-nitrophenol. 
Automated checks
Failed: Cannot find ncbi:assembly:JBSYXB010000001,JBSYXB010000002,JBSYXB010000003,JBSYXB010000004,JBSYXB010000005,JBSYXB010000006,JBSYXB010000007,JBSYXB010000008,JBSYXB010000009,JBSYXB010000010,JBSYXB010000011,JBSYXB010000012,JBSYXB010000013,JBSYXB010000014,JBSYXB010000015,JBSYXB010000016,JBSYXB010000017,JBSYXB010000018,JBSYXB010000019,JBSYXB010000020,JBSYXB010000021,JBSYXB010000022,JBSYXB010000023
Edit genome data
Last modified 3 months ago

Sample Metadata

BioSample entries
Date
Collection Date: 2018-10-04
Location
Not detected
Toponym
Geo Loc Name: India: West Bengal
Environment
Sample Type: Pure culture
Isolation Source: water
Other
Not detected
Package
Not detected
All retrieved samples
Metadata retrieved 3 months ago

Sequencing Experiments

SRR36475856


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