BioSample Accession(s)

SAMN10805732, ERS22746948

type-material

reference material of Candidatus Izemoplasma acidinucleici

environmetal-sample

TRUE

organism

Candidatus Izemoplasma acidinucleici

collection date

2014

isolation source

surface marine sediments

env_broad_scale

Sediment

geo loc name

Greenland: Baffin Bay

metagenomic

TRUE

derived-from

This BioSample is a metagenomic assembly obtained from the marine sediment metagenome BioSample: SAMN10594398

metagenome source

marine sediment metagenome

env_local_scale

ocean

isolate

MAG-BB-5

NCBI submission package

Microbe.1.0

depth

0-30cm

lat lon

76.18 N 73.13 W

elev

200m

env_medium

sediment

sample-type

metagenomic assembly

BioSampleModel

Microbe, viral or environmental

ENA-FIRST-PUBLIC

2019-01-28

ENA-LAST-UPDATE

2024-06-23

Marine sediment incubated in microcosms

BioSample Accession(s)

SAMN10594398, SRS4167009

collection_date

2014-07

replicate

microcosm5

INSDC secondary accession

SRS4167009

NCBI submission package

Metagenome.environmental.1.0

organism

marine sediment metagenome

geo_loc_name

Greenland: Baffin Bay

lat_lon

76.18 N 73.13 W

isolation_source

Surface marine sediments; Day-31 13C-DNA treatment

BioSampleModel

Metagenome or environmental

ENA-FIRST-PUBLIC

2018-12-14

ENA-LAST-UPDATE

2021-02-28

Metadata as EBI XML

<EXPERIMENT_SET>
<EXPERIMENT accession="SRX5157085" alias="Day 31 13C-DNA treatment" center_name="SUB4917950" broker_name="NCBI">
  <IDENTIFIERS>
    <PRIMARY_ID>SRX5157085</PRIMARY_ID>
    <SUBMITTER_ID namespace="SUB4917950">Day 31 13C-DNA treatment</SUBMITTER_ID>
  </IDENTIFIERS>
  <TITLE>Day 31 13C-DNA treatment</TITLE>
  <STUDY_REF accession="SRP173640">
    <IDENTIFIERS>
      <PRIMARY_ID>SRP173640</PRIMARY_ID>
      <EXTERNAL_ID namespace="BioProject">PRJNA510104</EXTERNAL_ID>
    </IDENTIFIERS>
  </STUDY_REF>
  <DESIGN>
    <DESIGN_DESCRIPTION>Libraries prepared with Nextera XT</DESIGN_DESCRIPTION>
    <SAMPLE_DESCRIPTOR accession="SRS4167009">
      <IDENTIFIERS>
        <PRIMARY_ID>SRS4167009</PRIMARY_ID>
        <EXTERNAL_ID namespace="BioSample">SAMN10594398</EXTERNAL_ID>
      </IDENTIFIERS>
    </SAMPLE_DESCRIPTOR>
    <LIBRARY_DESCRIPTOR>
      <LIBRARY_NAME>Day 31 13C-DNA treatment</LIBRARY_NAME>
      <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
      <LIBRARY_SOURCE>METAGENOMIC</LIBRARY_SOURCE>
      <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
      <LIBRARY_LAYOUT>
        <PAIRED/>
      </LIBRARY_LAYOUT>
    </LIBRARY_DESCRIPTOR>
  </DESIGN>
  <PLATFORM>
    <ILLUMINA>
      <INSTRUMENT_MODEL>Illumina HiSeq 2500</INSTRUMENT_MODEL>
    </ILLUMINA>
  </PLATFORM>
  <EXPERIMENT_LINKS>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-SAMPLE</DB>
        <ID>SRS4167009</ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-SUBMISSION</DB>
        <ID>SRA824582</ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-FASTQ-FILES</DB>
        <ID><![CDATA[https://www.ebi.ac.uk/ena/portal/api/filereport?accession=SRX5157085&result=read_run&fields=run_accession,fastq_ftp,fastq_md5,fastq_bytes]]></ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-SUBMITTED-FILES</DB>
        <ID><![CDATA[https://www.ebi.ac.uk/ena/portal/api/filereport?accession=SRX5157085&result=read_run&fields=run_accession,submitted_ftp,submitted_md5,submitted_bytes,submitted_format]]></ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
  </EXPERIMENT_LINKS>
  <EXPERIMENT_ATTRIBUTES>
    <EXPERIMENT_ATTRIBUTE>
      <TAG>ENA-STATUS-ID</TAG>
      <VALUE>4</VALUE>
    </EXPERIMENT_ATTRIBUTE>
  </EXPERIMENT_ATTRIBUTES>
</EXPERIMENT>
</EXPERIMENT_SET>