SeqCode Registry
cognitis nomina
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Genomes
sc|0000059
JSON
Genome sc|0000059
Name
Sulfomarinibacter kjeldsenii
Ts
Database
NCBI Assembly
Accession
GCA_014764525.1
Genomics
Accession
NCBI Assembly:
GCA_014764525.1
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
Completeness:
91.2%
Contamination:
3.4%
Quality:
74.2
Ribosomal and transfer RNA genes
0 16S rRNAs
0 23S rRNAs
tRNAs for 14 amino acids
Source
BioSample: SAMN15691665
BioSample: SAMN15677121
Other features
G+C Content:
60.9%
Coding Density:
91.44%
Codon Table:
11
N50:
5,914 bp
Contigs:
783
Largest Contig:
59,750 bp
Assembly Length:
3,935,293 bp
Ambiguous Assembly Fraction:
0.36%
Automated checks
Complete
Sample Metadata
Date
Collection Date:
2016-07
Location
Lat Lon:
79.713833 N 11.085000 E
Toponym
Geo Loc Name:
Svalbard: Smeerenburgfjorden
Environment
Sample Type:
metagenomic assembly
Isolation Source:
marine sediment; Station J, 5-10 cmbsf, microcosm with tetrathionate + molybdate
Other
Not detected
Package
Ncbi Submission Package:
Microbe.1.0
•
Metagenome.environmental.1.0
Biosamplemodel:
Microbe, viral or environmental • Metagenome or environmental
All retrieved samples
SAMN15691665
: Microbe sample from Acidobacteriota bacterium
SAMN15677121
: Metagenome or environmental sample from marine sediment metagenome
Metadata retrieved
8 months ago
© 2022-2024 The SeqCode Initiative
All information contributed to the SeqCode Registry is released under the terms of the
Creative Commons Attribution (CC BY) 4.0
license
Automated Estimates
×
This genome was automatically retrieved and processed using MiGA (The Microbial Genomes Atlas)
[1]
, and the estimate has not been overridden by the submitter.
Rodriguez-R et al, 2018, NAR.
DOI: 10.1093/nar/gky467
SAMN15691665
×
isolate
MAG AM3-C
NCBI submission package
Microbe.1.0
lat lon
79.713833 N 11.085000 E
organism
Acidobacteriota bacterium
collection date
2016-07
isolation source
marine sediment; Station J, 5-10 cmbsf, microcosm with tetrathionate + molybdate
geo loc name
Svalbard: Smeerenburgfjorden
metagenomic
1
derived-from
This BioSample is a metagenomic assembly obtained from the marine sediment metagenome BioSample: SAMN15677121
environmental sample
1
metagenome source
marine sediment metagenome
sample-type
metagenomic assembly
BioSampleModel
Microbe, viral or environmental
ENA-FIRST-PUBLIC
2020-08-01
ENA-LAST-UPDATE
2023-02-14
SAMN15677121
×
INSDC secondary accession
SRS7120137
NCBI submission package
Metagenome.environmental.1.0
lat lon
79.713833 N 11.085000 E
Sample_real_name
Smeerenburgfjorden; Station J, 5-10 cmbsf, microcosm with tetrathionate + molybdate
organism
marine sediment metagenome
collection date
2016-07
isolation source
marine sediment; Station J, 5-10 cmbsf, microcosm with tetrathionate + molybdate
geo loc name
Svalbard: Smeerenburgfjorden
BioSampleModel
Metagenome or environmental
ENA-FIRST-PUBLIC
2020-07-30
ENA-LAST-UPDATE
2021-02-28
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