JSON

Genome sc|0005902

Name

Not registered

Database

NCBI Assembly

Accession

CP113000.1

Marked for deletion

This genome is currently not registered as the nomenclatural type or the reference genome of any names in the Registry, and it will be purged from the database soon unless it is linked to a name

Genomics

Accession
NCBI Assembly:CP113000.1
Cultures
Strain sc|0041719
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
  • Completeness: 100.0%
  • Contamination: 0.0%
  • Quality: 100.0
Ribosomal and transfer RNA genes
  • 1 16S rRNA (up to 100.0%)
  • 1 23S rRNA (up to 100.0%)
  • tRNAs for 21 amino acids
Sequencing depth
993.0 ×
Source
Other features
  • G+C Content: 44.11%
Submitter comments
MAG assembly and curation described in Toth et al. 2023 (https://doi.org/10.1128/mra.01342-22).
Automated checks
Failed: Cannot find ncbi:assembly:CP113000.1
Edit genome data
Last modified 3 months ago

Sample Metadata

BioSample entries
Date
Collection Date: 2016/2017
Location
Lat Lon: 36° N, 97° W
View map of sampling locations
Toponym
Geo Loc Name: USA: Oklahoma, oil refinery
Environment
Isolation Source: methanogenic benzene degrading enrichment cultures DGG1A and DGG0; original culture inoculated with contaminated sediments from an oil refinery
Other
Not detected
Package
Ncbi Submission Package: Metagenome.environmental.1.0
Biosamplemodel: Metagenome or environmental
Additional Accessions
SAMN31274452 and SAMN31274454 Append as BioSamples
All retrieved samples
Metadata retrieved 3 months ago


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