Genome sc|0005931


Database

NCBI Assembly

Accession

GCA_002890575.1

Genomics

Accession
NCBI Assembly:GCA_002890575.1
Type
Single-Cell Amplified Genome (SAG)
Estimated Quality Metrics
  • Completeness: 96.37%
  • Contamination: 0.92%
  • Quality: 91.77
Ribosomal and transfer RNA genes
  • 1 16S rRNA (up to 100.0%)
  • 1 23S rRNA (up to 100.0%)
  • tRNAs for 20 amino acids
Sequencing depth
1000.0 ×
Source
Other features
  • G+C Content: 57.5%
  • Coding Density: 83.08%
  • Codon Table: 11
  • N50: 24,401 bp
  • Contigs: 529
  • Largest Contig: 90,172 bp
  • Assembly Length: 2,776,130 bp
  • Ambiguous Assembly Fraction: 0.0%
Submitter comments
Completeness and contamination were estimated with CheckM2.
Automated checks
Complete

Last modified 1 day ago

Sample Metadata

BioSample entries
Date
Collection Date: 2012
Location
Not detected
Toponym
Geo Loc Name: USA: Columbus, Ohio
Environment
Sample Type: single cell
Env Biome: human-associated habitat
Isolation Source: single cell amplified by MDA; dental plaque
Other
Host: Homo sapiens
Package
Not detected
All retrieved samples

Metadata retrieved 29 days ago

Sequencing Experiments

Single cell sequence Tannerella sp. BU045


© 2022-2026 The SeqCode Initiative
  All information contributed to the SeqCode Registry is released under the terms of the Creative Commons Attribution (CC BY) 4.0 license
seqco.de/r:ntmifwcb