Genome sc|0006002

Genomics

Accession

NCBI Assembly:GCA_057407595.1

Type

Metagenome-Assembled Genome (MAG)

Estimated Quality Metrics

• Completeness: 99.1%
• Contamination: 2.8%
• Quality: 85.1

Ribosomal and transfer RNA genes

• 3 16S rRNAs (up to 100.0%)
• 3 23S rRNAs (up to 100.0%)
• tRNAs for 20 amino acids

Sequencing depth

225.0 ×

Source

• SRA: SRX27946575

Other features

• G+C Content: 51.44%
• Coding Density: 89.9%
• Codon Table: 11
• N50: 3,830,996 bp
• Contigs: 1
• Largest Contig: 3,830,996 bp
• Assembly Length: 3,830,996 bp
• Ambiguous Assembly Fraction: 0.0%

Automated checks

Complete

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Last modified 24 days ago

Sample Metadata

BioSample entries

• BioSample: SRS24312619

Date

Collection Date: 2023-03-25

Location

Lat Lon: 65° 43′ 48″ N, 22° 26′ 48″ E

View map of sampling locations

Toponym

Geo Loc Name: Sweden: Bothnian Bay

Environment

Isolation Source: Coastal marine sediment: ENVO:00002155

Env Broad Scale: Marine sediment [ENVO:00002007]

Env Local Scale: Local-scale environmental context: Methanogenic zone in coastal marine sediment at 30-36 cm depth, Bothnian Bay, Baltic Sea [ENVO:03000034]

Env Medium: Local-scale environmental context: Methanogenic zone in coastal marine sediment at 30-36 cm depth, Bothnian Bay, Baltic Sea [ENVO:03000034] Media DSMZ 120 Baltic and La cruz consortia modified

Other

Depth: origin from the depth was 30-36

Package

Not detected

All retrieved samples

• SRS24312619: MIMARKS Survey related sample from sediment metagenome

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Metadata retrieved 24 days ago