Keywords: GSC:MIxS;MIMARKS:6.0

BioSample Accession(s)

SRS24312619, SAMN47284751

collection_date

2023-03-25

depth

origin from the depth was 30-36

elev

0

env_broad_scale

Marine sediment [ENVO:00002007]

env_local_scale

Local-scale environmental context: Methanogenic zone in coastal marine sediment at 30-36 cm depth, Bothnian Bay, Baltic Sea [ENVO:03000034]

env_medium

Local-scale environmental context: Methanogenic zone in coastal marine sediment at 30-36 cm depth, Bothnian Bay, Baltic Sea [ENVO:03000034] Media DSMZ 120 Baltic and La cruz consortia modified

geo_loc_name

Sweden: Bothnian Bay

isolate

This sample is from the cultures which are inoculated with Magnetite nano powder

isolation_source

Coastal marine sediment: ENVO:00002155

lat_lon

65.7300 N 22.4467 E

Metadata as EBI XML

<EXPERIMENT_SET>
<EXPERIMENT accession="SRX27946575" alias="BAG" center_name="SUB14635855" broker_name="NCBI">
  <IDENTIFIERS>
    <PRIMARY_ID>SRX27946575</PRIMARY_ID>
    <SUBMITTER_ID namespace="SUB14635855">BAG</SUBMITTER_ID>
  </IDENTIFIERS>
  <TITLE>Baltic Consortia from Bothnian Bay, incubated with granulated activated carbon</TITLE>
  <STUDY_REF accession="SRP569487">
    <IDENTIFIERS>
      <PRIMARY_ID>SRP569487</PRIMARY_ID>
      <EXTERNAL_ID namespace="BioProject">PRJNA1140524</EXTERNAL_ID>
    </IDENTIFIERS>
  </STUDY_REF>
  <DESIGN>
    <DESIGN_DESCRIPTION>Metagenomic sequencing of syntrophic acetate oxidizing Baltic Consortia under different conductive conditions</DESIGN_DESCRIPTION>
    <SAMPLE_DESCRIPTOR accession="SRS24312619">
      <IDENTIFIERS>
        <PRIMARY_ID>SRS24312619</PRIMARY_ID>
        <SUBMITTER_ID namespace="pda|djovicic@biology.sdu.dk">BAG-Bothnian bay</SUBMITTER_ID>
      </IDENTIFIERS>
    </SAMPLE_DESCRIPTOR>
    <LIBRARY_DESCRIPTOR>
      <LIBRARY_NAME>BAG</LIBRARY_NAME>
      <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
      <LIBRARY_SOURCE>METAGENOMIC</LIBRARY_SOURCE>
      <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
      <LIBRARY_LAYOUT>
        <SINGLE/>
      </LIBRARY_LAYOUT>
    </LIBRARY_DESCRIPTOR>
  </DESIGN>
  <PLATFORM>
    <OXFORD_NANOPORE>
      <INSTRUMENT_MODEL>PromethION</INSTRUMENT_MODEL>
    </OXFORD_NANOPORE>
  </PLATFORM>
  <EXPERIMENT_LINKS>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-SAMPLE</DB>
        <ID>SRS24312619</ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-SUBMISSION</DB>
        <ID>SRA2091536</ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-FASTQ-FILES</DB>
        <ID><![CDATA[https://www.ebi.ac.uk/ena/portal/api/filereport?accession=SRX27946575&result=read_run&fields=run_accession,fastq_ftp,fastq_md5,fastq_bytes]]></ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-SUBMITTED-FILES</DB>
        <ID><![CDATA[https://www.ebi.ac.uk/ena/portal/api/filereport?accession=SRX27946575&result=read_run&fields=run_accession,submitted_ftp,submitted_md5,submitted_bytes,submitted_format]]></ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
  </EXPERIMENT_LINKS>
  <EXPERIMENT_ATTRIBUTES>
    <EXPERIMENT_ATTRIBUTE>
      <TAG>ENA-STATUS</TAG>
      <VALUE>PUBLIC</VALUE>
    </EXPERIMENT_ATTRIBUTE>
  </EXPERIMENT_ATTRIBUTES>
</EXPERIMENT>
</EXPERIMENT_SET>