Genome sc|0000061

Genomics

Accession

NCBI Assembly:GCA_023267855.1

Type

Metagenome-Assembled Genome (MAG)

Estimated Quality Metrics

• Completeness: 99.03%
• Contamination: 0.0%
• Quality: 99.03

Ribosomal and transfer RNA genes

• 1 16S rRNA (up to 36.0%)
• 1 23S rRNA (up to 100.0%)
• tRNAs for 19 amino acids

Sequencing depth

144.0 ×

Source

• BioSample: SAMN26029326
• BioSample: SAMN27648497

Other features

• G+C Content: 37.5%
• Coding Density: 89.43%
• Codon Table: 11
• N50: 67,807 bp
• Contigs: 39
• Largest Contig: 157,123 bp
• Assembly Length: 1,439,013 bp
• Ambiguous Assembly Fraction: 0.014%

Automated checks

Complete

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Last modified about 1 month ago

Sample Metadata

BioSample entries

• BioSample: SAMN26029326
• BioSample: SAMN27648497

Date

Collection Date: 2018-03

Location

Lat Lon: 24.95110 N 98.43597 E

Toponym

Geo Loc Name: China: Tengchong, Zhenzhu hot spring

Environment

Sample Type: metagenomic assembly

Isolation Source: hot springs sediment

Env Broad Scale: hot spring biome

Other

Not detected

Package

Ncbi Submission Package: MIMAG.sediment.6.0 • Metagenome.environmental.1.0

Biosamplemodel: MIMAG.sediment • Metagenome or environmental

All retrieved samples

• SAMN26029326: MIMAG Metagenome-assembled Genome sample from Candidatus Geocrenenecus dongiae
• SAMN27648497: Metagenome or environmental sample from hot springs metagenome

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Metadata retrieved about 1 month ago