BioSample Accession(s)

SRS064014, SAMN00083038

analyte type

G_DNA_Tongue dorsum

biospecimen repository

EMMES_HMP

biospecimen repository sample id

700110593

gap_accession

phs000228

gap_consent_code

1

gap_consent_short_name

HMP

gap_sample_id

261014

gap_subject_id

241816

host sex

male

isolation source

G_DNA_Tongue dorsum

study design

Control Set

study name

HMP Core Microbiome Sampling Protocol A (HMP-A)

submitted sample id

700110593

submitted subject id

295137534

submitter handle

EMMES_HMP

Metadata as EBI XML

<RUN_SET>
<RUN accession="SRR532345" alias="C0LC2ACXX120516.6.tagged_542.bam" center_name="BI" run_center="BI" broker_name="NCBI">
  <IDENTIFIERS>
    <PRIMARY_ID>SRR532345</PRIMARY_ID>
    <SUBMITTER_ID namespace="BI">C0LC2ACXX120516.6.tagged_542.bam</SUBMITTER_ID>
  </IDENTIFIERS>
  <TITLE>Illumina HiSeq 2000 paired end sequencing; EMMES_HMP Illumina whole genome shotgun sequencing of genomic DNA paired-end library 'Pond-151586' containing sample 700110593 from participant 295137534</TITLE>
  <EXPERIMENT_REF accession="SRX173426" refcenter="BI" refname="74694.WR29711.Pond-151586.C0LC2ACXX120516.P">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX173426</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">74694.WR29711.Pond-151586.C0LC2ACXX120516.P</SUBMITTER_ID>
    </IDENTIFIERS>
  </EXPERIMENT_REF>
  <RUN_LINKS>
    <RUN_LINK>
      <XREF_LINK>
        <DB>ENA-SUBMISSION</DB>
        <ID>SRA056414</ID>
      </XREF_LINK>
    </RUN_LINK>
    <RUN_LINK>
      <XREF_LINK>
        <DB>ENA-STUDY</DB>
        <ID>SRP002163</ID>
      </XREF_LINK>
    </RUN_LINK>
    <RUN_LINK>
      <XREF_LINK>
        <DB>ENA-SAMPLE</DB>
        <ID>SRS064014</ID>
      </XREF_LINK>
    </RUN_LINK>
    <RUN_LINK>
      <XREF_LINK>
        <DB>ENA-FASTQ-FILES</DB>
        <ID><![CDATA[https://www.ebi.ac.uk/ena/portal/api/filereport?accession=SRR532345&result=read_run&fields=run_accession,fastq_ftp,fastq_md5,fastq_bytes]]></ID>
      </XREF_LINK>
    </RUN_LINK>
    <RUN_LINK>
      <XREF_LINK>
        <DB>ENA-SUBMITTED-FILES</DB>
        <ID><![CDATA[https://www.ebi.ac.uk/ena/portal/api/filereport?accession=SRR532345&result=read_run&fields=run_accession,submitted_ftp,submitted_md5,submitted_bytes,submitted_format]]></ID>
      </XREF_LINK>
    </RUN_LINK>
  </RUN_LINKS>
  <RUN_ATTRIBUTES>
    <RUN_ATTRIBUTE>
      <TAG>flowcell_barcode</TAG>
      <VALUE>C0LC2ACXX</VALUE>
    </RUN_ATTRIBUTE>
    <RUN_ATTRIBUTE>
      <TAG>gssr_id</TAG>
      <VALUE>185505.0</VALUE>
    </RUN_ATTRIBUTE>
    <RUN_ATTRIBUTE>
      <TAG>instrument_name</TAG>
      <VALUE>SL-HAA</VALUE>
    </RUN_ATTRIBUTE>
    <RUN_ATTRIBUTE>
      <TAG>lane</TAG>
      <VALUE>6</VALUE>
    </RUN_ATTRIBUTE>
    <RUN_ATTRIBUTE>
      <TAG>lsid</TAG>
      <VALUE>broadinstitute.org:bsp.prod.sample:2SIS3</VALUE>
    </RUN_ATTRIBUTE>
    <RUN_ATTRIBUTE>
      <TAG>molecular_indexing_scheme</TAG>
      <VALUE>tagged_542 [CTGTAATC]</VALUE>
    </RUN_ATTRIBUTE>
    <RUN_ATTRIBUTE>
      <TAG>project</TAG>
      <VALUE>G18195</VALUE>
    </RUN_ATTRIBUTE>
    <RUN_ATTRIBUTE>
      <TAG>read_group_id</TAG>
      <VALUE>C0LC2.6</VALUE>
    </RUN_ATTRIBUTE>
    <RUN_ATTRIBUTE>
      <TAG>read_group_platform_unit</TAG>
      <VALUE>C0LC2ACXX120516.6.CTGTAATC</VALUE>
    </RUN_ATTRIBUTE>
    <RUN_ATTRIBUTE>
      <TAG>root_sample_id</TAG>
      <VALUE>SM-2IPD9</VALUE>
    </RUN_ATTRIBUTE>
    <RUN_ATTRIBUTE>
      <TAG>run_barcode</TAG>
      <VALUE>C0LC2ACXX120516</VALUE>
    </RUN_ATTRIBUTE>
    <RUN_ATTRIBUTE>
      <TAG>run_name</TAG>
      <VALUE>120516_SL-HAA_0363_BFCC0LC2ACXX</VALUE>
    </RUN_ATTRIBUTE>
    <RUN_ATTRIBUTE>
      <TAG>sample_id</TAG>
      <VALUE>SM-2SIS3</VALUE>
    </RUN_ATTRIBUTE>
    <RUN_ATTRIBUTE>
      <TAG>work_request</TAG>
      <VALUE>29711</VALUE>
    </RUN_ATTRIBUTE>
    <RUN_ATTRIBUTE>
      <TAG>ENA-STATUS</TAG>
      <VALUE>PUBLIC</VALUE>
    </RUN_ATTRIBUTE>
    <RUN_ATTRIBUTE>
      <TAG>ENA-FIRST-PUBLIC</TAG>
      <VALUE>2012-10-05</VALUE>
    </RUN_ATTRIBUTE>
    <RUN_ATTRIBUTE>
      <TAG>ENA-LAST-UPDATE</TAG>
      <VALUE>2015-06-19</VALUE>
    </RUN_ATTRIBUTE>
    <RUN_ATTRIBUTE>
      <TAG>ENA-BASE-COUNT</TAG>
      <VALUE>684483666</VALUE>
    </RUN_ATTRIBUTE>
    <RUN_ATTRIBUTE>
      <TAG>ENA-SPOT-COUNT</TAG>
      <VALUE>3388533</VALUE>
    </RUN_ATTRIBUTE>
  </RUN_ATTRIBUTES>
</RUN>
</RUN_SET>

Metadata as EBI XML

<RUN_SET>
<RUN accession="SRR532355" alias="D0RYUACXX120510.2.tagged_542.bam" center_name="BI" run_center="BI" broker_name="NCBI">
  <IDENTIFIERS>
    <PRIMARY_ID>SRR532355</PRIMARY_ID>
    <SUBMITTER_ID namespace="BI">D0RYUACXX120510.2.tagged_542.bam</SUBMITTER_ID>
  </IDENTIFIERS>
  <TITLE>Illumina HiSeq 2000 paired end sequencing; EMMES_HMP Illumina whole genome shotgun sequencing of genomic DNA paired-end library 'Pond-151586' containing sample 700110593 from participant 295137534</TITLE>
  <EXPERIMENT_REF accession="SRX173434" refcenter="BI" refname="74694.WR29711.Pond-151586.D0RYUACXX120510.P">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX173434</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">74694.WR29711.Pond-151586.D0RYUACXX120510.P</SUBMITTER_ID>
    </IDENTIFIERS>
  </EXPERIMENT_REF>
  <RUN_LINKS>
    <RUN_LINK>
      <XREF_LINK>
        <DB>ENA-SUBMISSION</DB>
        <ID>SRA056414</ID>
      </XREF_LINK>
    </RUN_LINK>
    <RUN_LINK>
      <XREF_LINK>
        <DB>ENA-STUDY</DB>
        <ID>SRP002163</ID>
      </XREF_LINK>
    </RUN_LINK>
    <RUN_LINK>
      <XREF_LINK>
        <DB>ENA-SAMPLE</DB>
        <ID>SRS064014</ID>
      </XREF_LINK>
    </RUN_LINK>
    <RUN_LINK>
      <XREF_LINK>
        <DB>ENA-FASTQ-FILES</DB>
        <ID><![CDATA[https://www.ebi.ac.uk/ena/portal/api/filereport?accession=SRR532355&result=read_run&fields=run_accession,fastq_ftp,fastq_md5,fastq_bytes]]></ID>
      </XREF_LINK>
    </RUN_LINK>
    <RUN_LINK>
      <XREF_LINK>
        <DB>ENA-SUBMITTED-FILES</DB>
        <ID><![CDATA[https://www.ebi.ac.uk/ena/portal/api/filereport?accession=SRR532355&result=read_run&fields=run_accession,submitted_ftp,submitted_md5,submitted_bytes,submitted_format]]></ID>
      </XREF_LINK>
    </RUN_LINK>
  </RUN_LINKS>
  <RUN_ATTRIBUTES>
    <RUN_ATTRIBUTE>
      <TAG>flowcell_barcode</TAG>
      <VALUE>D0RYUACXX</VALUE>
    </RUN_ATTRIBUTE>
    <RUN_ATTRIBUTE>
      <TAG>gssr_id</TAG>
      <VALUE>185505.0</VALUE>
    </RUN_ATTRIBUTE>
    <RUN_ATTRIBUTE>
      <TAG>instrument_name</TAG>
      <VALUE>SL-HBP</VALUE>
    </RUN_ATTRIBUTE>
    <RUN_ATTRIBUTE>
      <TAG>lane</TAG>
      <VALUE>2</VALUE>
    </RUN_ATTRIBUTE>
    <RUN_ATTRIBUTE>
      <TAG>lsid</TAG>
      <VALUE>broadinstitute.org:bsp.prod.sample:2SIS3</VALUE>
    </RUN_ATTRIBUTE>
    <RUN_ATTRIBUTE>
      <TAG>molecular_indexing_scheme</TAG>
      <VALUE>tagged_542 [CTGTAATC]</VALUE>
    </RUN_ATTRIBUTE>
    <RUN_ATTRIBUTE>
      <TAG>project</TAG>
      <VALUE>G18195</VALUE>
    </RUN_ATTRIBUTE>
    <RUN_ATTRIBUTE>
      <TAG>read_group_id</TAG>
      <VALUE>D0RYU.2</VALUE>
    </RUN_ATTRIBUTE>
    <RUN_ATTRIBUTE>
      <TAG>read_group_platform_unit</TAG>
      <VALUE>D0RYUACXX120510.2.CTGTAATC</VALUE>
    </RUN_ATTRIBUTE>
    <RUN_ATTRIBUTE>
      <TAG>root_sample_id</TAG>
      <VALUE>SM-2IPD9</VALUE>
    </RUN_ATTRIBUTE>
    <RUN_ATTRIBUTE>
      <TAG>run_barcode</TAG>
      <VALUE>D0RYUACXX120510</VALUE>
    </RUN_ATTRIBUTE>
    <RUN_ATTRIBUTE>
      <TAG>run_name</TAG>
      <VALUE>120510_SL-HBP_0190_BFCD0RYUACXX</VALUE>
    </RUN_ATTRIBUTE>
    <RUN_ATTRIBUTE>
      <TAG>sample_id</TAG>
      <VALUE>SM-2SIS3</VALUE>
    </RUN_ATTRIBUTE>
    <RUN_ATTRIBUTE>
      <TAG>work_request</TAG>
      <VALUE>29711</VALUE>
    </RUN_ATTRIBUTE>
    <RUN_ATTRIBUTE>
      <TAG>ENA-STATUS</TAG>
      <VALUE>PUBLIC</VALUE>
    </RUN_ATTRIBUTE>
    <RUN_ATTRIBUTE>
      <TAG>ENA-FIRST-PUBLIC</TAG>
      <VALUE>2012-10-05</VALUE>
    </RUN_ATTRIBUTE>
    <RUN_ATTRIBUTE>
      <TAG>ENA-LAST-UPDATE</TAG>
      <VALUE>2015-06-19</VALUE>
    </RUN_ATTRIBUTE>
    <RUN_ATTRIBUTE>
      <TAG>ENA-BASE-COUNT</TAG>
      <VALUE>672597380</VALUE>
    </RUN_ATTRIBUTE>
    <RUN_ATTRIBUTE>
      <TAG>ENA-SPOT-COUNT</TAG>
      <VALUE>3329690</VALUE>
    </RUN_ATTRIBUTE>
  </RUN_ATTRIBUTES>
</RUN>
</RUN_SET>

Metadata as EBI XML

<RUN_SET>
<RUN accession="SRR532364" alias="D0RR2ACXX120427.5.tagged_542.bam" center_name="BI" run_center="BI" broker_name="NCBI">
  <IDENTIFIERS>
    <PRIMARY_ID>SRR532364</PRIMARY_ID>
    <SUBMITTER_ID namespace="BI">D0RR2ACXX120427.5.tagged_542.bam</SUBMITTER_ID>
  </IDENTIFIERS>
  <TITLE>Illumina HiSeq 2000 paired end sequencing; EMMES_HMP Illumina whole genome shotgun sequencing of genomic DNA paired-end library 'Pond-151586' containing sample 700110593 from participant 295137534</TITLE>
  <EXPERIMENT_REF accession="SRX173411" refcenter="BI" refname="74694.WR29711.Pond-151586.D0RR2ACXX120427.P">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX173411</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">74694.WR29711.Pond-151586.D0RR2ACXX120427.P</SUBMITTER_ID>
    </IDENTIFIERS>
  </EXPERIMENT_REF>
  <RUN_LINKS>
    <RUN_LINK>
      <XREF_LINK>
        <DB>ENA-SUBMISSION</DB>
        <ID>SRA056414</ID>
      </XREF_LINK>
    </RUN_LINK>
    <RUN_LINK>
      <XREF_LINK>
        <DB>ENA-STUDY</DB>
        <ID>SRP002163</ID>
      </XREF_LINK>
    </RUN_LINK>
    <RUN_LINK>
      <XREF_LINK>
        <DB>ENA-SAMPLE</DB>
        <ID>SRS064014</ID>
      </XREF_LINK>
    </RUN_LINK>
    <RUN_LINK>
      <XREF_LINK>
        <DB>ENA-FASTQ-FILES</DB>
        <ID><![CDATA[https://www.ebi.ac.uk/ena/portal/api/filereport?accession=SRR532364&result=read_run&fields=run_accession,fastq_ftp,fastq_md5,fastq_bytes]]></ID>
      </XREF_LINK>
    </RUN_LINK>
    <RUN_LINK>
      <XREF_LINK>
        <DB>ENA-SUBMITTED-FILES</DB>
        <ID><![CDATA[https://www.ebi.ac.uk/ena/portal/api/filereport?accession=SRR532364&result=read_run&fields=run_accession,submitted_ftp,submitted_md5,submitted_bytes,submitted_format]]></ID>
      </XREF_LINK>
    </RUN_LINK>
  </RUN_LINKS>
  <RUN_ATTRIBUTES>
    <RUN_ATTRIBUTE>
      <TAG>flowcell_barcode</TAG>
      <VALUE>D0RR2ACXX</VALUE>
    </RUN_ATTRIBUTE>
    <RUN_ATTRIBUTE>
      <TAG>gssr_id</TAG>
      <VALUE>185505.0</VALUE>
    </RUN_ATTRIBUTE>
    <RUN_ATTRIBUTE>
      <TAG>instrument_name</TAG>
      <VALUE>SL-HAW</VALUE>
    </RUN_ATTRIBUTE>
    <RUN_ATTRIBUTE>
      <TAG>lane</TAG>
      <VALUE>5</VALUE>
    </RUN_ATTRIBUTE>
    <RUN_ATTRIBUTE>
      <TAG>lsid</TAG>
      <VALUE>broadinstitute.org:bsp.prod.sample:2SIS3</VALUE>
    </RUN_ATTRIBUTE>
    <RUN_ATTRIBUTE>
      <TAG>molecular_indexing_scheme</TAG>
      <VALUE>tagged_542 [CTGTAATC]</VALUE>
    </RUN_ATTRIBUTE>
    <RUN_ATTRIBUTE>
      <TAG>project</TAG>
      <VALUE>G18195</VALUE>
    </RUN_ATTRIBUTE>
    <RUN_ATTRIBUTE>
      <TAG>read_group_id</TAG>
      <VALUE>D0RR2.5</VALUE>
    </RUN_ATTRIBUTE>
    <RUN_ATTRIBUTE>
      <TAG>read_group_platform_unit</TAG>
      <VALUE>D0RR2ACXX120427.5.CTGTAATC</VALUE>
    </RUN_ATTRIBUTE>
    <RUN_ATTRIBUTE>
      <TAG>root_sample_id</TAG>
      <VALUE>SM-2IPD9</VALUE>
    </RUN_ATTRIBUTE>
    <RUN_ATTRIBUTE>
      <TAG>run_barcode</TAG>
      <VALUE>D0RR2ACXX120427</VALUE>
    </RUN_ATTRIBUTE>
    <RUN_ATTRIBUTE>
      <TAG>run_name</TAG>
      <VALUE>120427_SL-HAW_0173_BFCD0RR2ACXX</VALUE>
    </RUN_ATTRIBUTE>
    <RUN_ATTRIBUTE>
      <TAG>sample_id</TAG>
      <VALUE>SM-2SIS3</VALUE>
    </RUN_ATTRIBUTE>
    <RUN_ATTRIBUTE>
      <TAG>work_request</TAG>
      <VALUE>29711</VALUE>
    </RUN_ATTRIBUTE>
    <RUN_ATTRIBUTE>
      <TAG>ENA-STATUS</TAG>
      <VALUE>PUBLIC</VALUE>
    </RUN_ATTRIBUTE>
    <RUN_ATTRIBUTE>
      <TAG>ENA-FIRST-PUBLIC</TAG>
      <VALUE>2012-10-05</VALUE>
    </RUN_ATTRIBUTE>
    <RUN_ATTRIBUTE>
      <TAG>ENA-LAST-UPDATE</TAG>
      <VALUE>2015-06-19</VALUE>
    </RUN_ATTRIBUTE>
    <RUN_ATTRIBUTE>
      <TAG>ENA-BASE-COUNT</TAG>
      <VALUE>394583145</VALUE>
    </RUN_ATTRIBUTE>
    <RUN_ATTRIBUTE>
      <TAG>ENA-SPOT-COUNT</TAG>
      <VALUE>2391413</VALUE>
    </RUN_ATTRIBUTE>
  </RUN_ATTRIBUTES>
</RUN>
</RUN_SET>

Metadata as EBI XML

<RUN_SET>
<RUN accession="SRR532367" alias="D0RR2ACXX120427.7.tagged_542.bam" center_name="BI" run_center="BI" broker_name="NCBI">
  <IDENTIFIERS>
    <PRIMARY_ID>SRR532367</PRIMARY_ID>
    <SUBMITTER_ID namespace="BI">D0RR2ACXX120427.7.tagged_542.bam</SUBMITTER_ID>
  </IDENTIFIERS>
  <TITLE>Illumina HiSeq 2000 paired end sequencing; EMMES_HMP Illumina whole genome shotgun sequencing of genomic DNA paired-end library 'Pond-151586' containing sample 700110593 from participant 295137534</TITLE>
  <EXPERIMENT_REF accession="SRX173411" refcenter="BI" refname="74694.WR29711.Pond-151586.D0RR2ACXX120427.P">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX173411</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">74694.WR29711.Pond-151586.D0RR2ACXX120427.P</SUBMITTER_ID>
    </IDENTIFIERS>
  </EXPERIMENT_REF>
  <RUN_LINKS>
    <RUN_LINK>
      <XREF_LINK>
        <DB>ENA-SUBMISSION</DB>
        <ID>SRA056414</ID>
      </XREF_LINK>
    </RUN_LINK>
    <RUN_LINK>
      <XREF_LINK>
        <DB>ENA-STUDY</DB>
        <ID>SRP002163</ID>
      </XREF_LINK>
    </RUN_LINK>
    <RUN_LINK>
      <XREF_LINK>
        <DB>ENA-SAMPLE</DB>
        <ID>SRS064014</ID>
      </XREF_LINK>
    </RUN_LINK>
    <RUN_LINK>
      <XREF_LINK>
        <DB>ENA-FASTQ-FILES</DB>
        <ID><![CDATA[https://www.ebi.ac.uk/ena/portal/api/filereport?accession=SRR532367&result=read_run&fields=run_accession,fastq_ftp,fastq_md5,fastq_bytes]]></ID>
      </XREF_LINK>
    </RUN_LINK>
    <RUN_LINK>
      <XREF_LINK>
        <DB>ENA-SUBMITTED-FILES</DB>
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      </XREF_LINK>
    </RUN_LINK>
  </RUN_LINKS>
  <RUN_ATTRIBUTES>
    <RUN_ATTRIBUTE>
      <TAG>flowcell_barcode</TAG>
      <VALUE>D0RR2ACXX</VALUE>
    </RUN_ATTRIBUTE>
    <RUN_ATTRIBUTE>
      <TAG>gssr_id</TAG>
      <VALUE>185505.0</VALUE>
    </RUN_ATTRIBUTE>
    <RUN_ATTRIBUTE>
      <TAG>instrument_name</TAG>
      <VALUE>SL-HAW</VALUE>
    </RUN_ATTRIBUTE>
    <RUN_ATTRIBUTE>
      <TAG>lane</TAG>
      <VALUE>7</VALUE>
    </RUN_ATTRIBUTE>
    <RUN_ATTRIBUTE>
      <TAG>lsid</TAG>
      <VALUE>broadinstitute.org:bsp.prod.sample:2SIS3</VALUE>
    </RUN_ATTRIBUTE>
    <RUN_ATTRIBUTE>
      <TAG>molecular_indexing_scheme</TAG>
      <VALUE>tagged_542 [CTGTAATC]</VALUE>
    </RUN_ATTRIBUTE>
    <RUN_ATTRIBUTE>
      <TAG>project</TAG>
      <VALUE>G18195</VALUE>
    </RUN_ATTRIBUTE>
    <RUN_ATTRIBUTE>
      <TAG>read_group_id</TAG>
      <VALUE>D0RR2.7</VALUE>
    </RUN_ATTRIBUTE>
    <RUN_ATTRIBUTE>
      <TAG>read_group_platform_unit</TAG>
      <VALUE>D0RR2ACXX120427.7.CTGTAATC</VALUE>
    </RUN_ATTRIBUTE>
    <RUN_ATTRIBUTE>
      <TAG>root_sample_id</TAG>
      <VALUE>SM-2IPD9</VALUE>
    </RUN_ATTRIBUTE>
    <RUN_ATTRIBUTE>
      <TAG>run_barcode</TAG>
      <VALUE>D0RR2ACXX120427</VALUE>
    </RUN_ATTRIBUTE>
    <RUN_ATTRIBUTE>
      <TAG>run_name</TAG>
      <VALUE>120427_SL-HAW_0173_BFCD0RR2ACXX</VALUE>
    </RUN_ATTRIBUTE>
    <RUN_ATTRIBUTE>
      <TAG>sample_id</TAG>
      <VALUE>SM-2SIS3</VALUE>
    </RUN_ATTRIBUTE>
    <RUN_ATTRIBUTE>
      <TAG>work_request</TAG>
      <VALUE>29711</VALUE>
    </RUN_ATTRIBUTE>
    <RUN_ATTRIBUTE>
      <TAG>ENA-STATUS</TAG>
      <VALUE>PUBLIC</VALUE>
    </RUN_ATTRIBUTE>
    <RUN_ATTRIBUTE>
      <TAG>ENA-FIRST-PUBLIC</TAG>
      <VALUE>2012-10-05</VALUE>
    </RUN_ATTRIBUTE>
    <RUN_ATTRIBUTE>
      <TAG>ENA-LAST-UPDATE</TAG>
      <VALUE>2015-06-19</VALUE>
    </RUN_ATTRIBUTE>
    <RUN_ATTRIBUTE>
      <TAG>ENA-BASE-COUNT</TAG>
      <VALUE>358368615</VALUE>
    </RUN_ATTRIBUTE>
    <RUN_ATTRIBUTE>
      <TAG>ENA-SPOT-COUNT</TAG>
      <VALUE>2171931</VALUE>
    </RUN_ATTRIBUTE>
  </RUN_ATTRIBUTES>
</RUN>
</RUN_SET>

Metadata as EBI XML

<RUN_SET>
<RUN accession="SRR532635" alias="C0LC2ACXX120516.2.tagged_542.bam" center_name="BI" run_center="BI" broker_name="NCBI">
  <IDENTIFIERS>
    <PRIMARY_ID>SRR532635</PRIMARY_ID>
    <SUBMITTER_ID namespace="BI">C0LC2ACXX120516.2.tagged_542.bam</SUBMITTER_ID>
  </IDENTIFIERS>
  <TITLE>Illumina HiSeq 2000 paired end sequencing; EMMES_HMP Illumina whole genome shotgun sequencing of genomic DNA paired-end library 'Pond-151586' containing sample 700110593 from participant 295137534</TITLE>
  <EXPERIMENT_REF accession="SRX173426" refcenter="BI" refname="74694.WR29711.Pond-151586.C0LC2ACXX120516.P">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX173426</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">74694.WR29711.Pond-151586.C0LC2ACXX120516.P</SUBMITTER_ID>
    </IDENTIFIERS>
  </EXPERIMENT_REF>
  <RUN_LINKS>
    <RUN_LINK>
      <XREF_LINK>
        <DB>ENA-SUBMISSION</DB>
        <ID>SRA056414</ID>
      </XREF_LINK>
    </RUN_LINK>
    <RUN_LINK>
      <XREF_LINK>
        <DB>ENA-STUDY</DB>
        <ID>SRP002163</ID>
      </XREF_LINK>
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    <RUN_LINK>
      <XREF_LINK>
        <DB>ENA-SAMPLE</DB>
        <ID>SRS064014</ID>
      </XREF_LINK>
    </RUN_LINK>
    <RUN_LINK>
      <XREF_LINK>
        <DB>ENA-FASTQ-FILES</DB>
        <ID><![CDATA[https://www.ebi.ac.uk/ena/portal/api/filereport?accession=SRR532635&result=read_run&fields=run_accession,fastq_ftp,fastq_md5,fastq_bytes]]></ID>
      </XREF_LINK>
    </RUN_LINK>
    <RUN_LINK>
      <XREF_LINK>
        <DB>ENA-SUBMITTED-FILES</DB>
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      </XREF_LINK>
    </RUN_LINK>
  </RUN_LINKS>
  <RUN_ATTRIBUTES>
    <RUN_ATTRIBUTE>
      <TAG>flowcell_barcode</TAG>
      <VALUE>C0LC2ACXX</VALUE>
    </RUN_ATTRIBUTE>
    <RUN_ATTRIBUTE>
      <TAG>gssr_id</TAG>
      <VALUE>185505.0</VALUE>
    </RUN_ATTRIBUTE>
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      <TAG>instrument_name</TAG>
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Metadata as EBI XML

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Metadata as EBI XML

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Metadata as EBI XML

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</RUN_SET>

Metadata as EBI XML

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Metadata as EBI XML

<RUN_SET>
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Metadata as EBI XML

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Metadata as EBI XML

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Metadata as EBI XML

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Metadata as EBI XML

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Metadata as EBI XML

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Metadata as EBI XML

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Metadata as EBI XML

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Metadata as EBI XML

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Metadata as EBI XML

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Metadata as EBI XML

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Metadata as EBI XML

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Metadata as EBI XML

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</RUN_SET>

Metadata as EBI XML

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Metadata as EBI XML

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Metadata as EBI XML

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Metadata as EBI XML

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Metadata as EBI XML

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Metadata as EBI XML

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Metadata as EBI XML

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Metadata as EBI XML

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Metadata as EBI XML

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Metadata as EBI XML

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Metadata as EBI XML

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Metadata as EBI XML

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Metadata as EBI XML

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Metadata as EBI XML

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Metadata as EBI XML

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      <VALUE>514410170</VALUE>
    </RUN_ATTRIBUTE>
    <RUN_ATTRIBUTE>
      <TAG>ENA-SPOT-COUNT</TAG>
      <VALUE>2546585</VALUE>
    </RUN_ATTRIBUTE>
  </RUN_ATTRIBUTES>
</RUN>
</RUN_SET>

Metadata as EBI XML

<RUN_SET>
<RUN accession="SRR549621" alias="D0RYUACXX120510.5.tagged_542.bam" center_name="BI" run_center="BI" broker_name="NCBI">
  <IDENTIFIERS>
    <PRIMARY_ID>SRR549621</PRIMARY_ID>
    <SUBMITTER_ID namespace="BI">D0RYUACXX120510.5.tagged_542.bam</SUBMITTER_ID>
  </IDENTIFIERS>
  <TITLE>Illumina HiSeq 2000 paired end sequencing; EMMES_HMP Illumina whole genome shotgun sequencing of genomic DNA paired-end library 'Pond-151586' containing sample 700110593 from participant 295137534</TITLE>
  <EXPERIMENT_REF accession="SRX173434" refcenter="BI" refname="74694.WR29711.Pond-151586.D0RYUACXX120510.P">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX173434</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">74694.WR29711.Pond-151586.D0RYUACXX120510.P</SUBMITTER_ID>
    </IDENTIFIERS>
  </EXPERIMENT_REF>
  <RUN_LINKS>
    <RUN_LINK>
      <XREF_LINK>
        <DB>ENA-SUBMISSION</DB>
        <ID>SRA056414</ID>
      </XREF_LINK>
    </RUN_LINK>
    <RUN_LINK>
      <XREF_LINK>
        <DB>ENA-STUDY</DB>
        <ID>SRP002163</ID>
      </XREF_LINK>
    </RUN_LINK>
    <RUN_LINK>
      <XREF_LINK>
        <DB>ENA-SAMPLE</DB>
        <ID>SRS064014</ID>
      </XREF_LINK>
    </RUN_LINK>
    <RUN_LINK>
      <XREF_LINK>
        <DB>ENA-FASTQ-FILES</DB>
        <ID><![CDATA[https://www.ebi.ac.uk/ena/portal/api/filereport?accession=SRR549621&result=read_run&fields=run_accession,fastq_ftp,fastq_md5,fastq_bytes]]></ID>
      </XREF_LINK>
    </RUN_LINK>
    <RUN_LINK>
      <XREF_LINK>
        <DB>ENA-SUBMITTED-FILES</DB>
        <ID><![CDATA[https://www.ebi.ac.uk/ena/portal/api/filereport?accession=SRR549621&result=read_run&fields=run_accession,submitted_ftp,submitted_md5,submitted_bytes,submitted_format]]></ID>
      </XREF_LINK>
    </RUN_LINK>
  </RUN_LINKS>
  <RUN_ATTRIBUTES>
    <RUN_ATTRIBUTE>
      <TAG>flowcell_barcode</TAG>
      <VALUE>D0RYUACXX</VALUE>
    </RUN_ATTRIBUTE>
    <RUN_ATTRIBUTE>
      <TAG>gssr_id</TAG>
      <VALUE>185505.0</VALUE>
    </RUN_ATTRIBUTE>
    <RUN_ATTRIBUTE>
      <TAG>instrument_name</TAG>
      <VALUE>SL-HBP</VALUE>
    </RUN_ATTRIBUTE>
    <RUN_ATTRIBUTE>
      <TAG>lane</TAG>
      <VALUE>5</VALUE>
    </RUN_ATTRIBUTE>
    <RUN_ATTRIBUTE>
      <TAG>lsid</TAG>
      <VALUE>broadinstitute.org:bsp.prod.sample:2SIS3</VALUE>
    </RUN_ATTRIBUTE>
    <RUN_ATTRIBUTE>
      <TAG>molecular_indexing_scheme</TAG>
      <VALUE>tagged_542 [CTGTAATC]</VALUE>
    </RUN_ATTRIBUTE>
    <RUN_ATTRIBUTE>
      <TAG>project</TAG>
      <VALUE>G18195</VALUE>
    </RUN_ATTRIBUTE>
    <RUN_ATTRIBUTE>
      <TAG>read_group_id</TAG>
      <VALUE>D0RYU.5</VALUE>
    </RUN_ATTRIBUTE>
    <RUN_ATTRIBUTE>
      <TAG>read_group_platform_unit</TAG>
      <VALUE>D0RYUACXX120510.5.CTGTAATC</VALUE>
    </RUN_ATTRIBUTE>
    <RUN_ATTRIBUTE>
      <TAG>root_sample_id</TAG>
      <VALUE>SM-2IPD9</VALUE>
    </RUN_ATTRIBUTE>
    <RUN_ATTRIBUTE>
      <TAG>run_barcode</TAG>
      <VALUE>D0RYUACXX120510</VALUE>
    </RUN_ATTRIBUTE>
    <RUN_ATTRIBUTE>
      <TAG>run_name</TAG>
      <VALUE>120510_SL-HBP_0190_BFCD0RYUACXX</VALUE>
    </RUN_ATTRIBUTE>
    <RUN_ATTRIBUTE>
      <TAG>sample_id</TAG>
      <VALUE>SM-2SIS3</VALUE>
    </RUN_ATTRIBUTE>
    <RUN_ATTRIBUTE>
      <TAG>work_request</TAG>
      <VALUE>29711</VALUE>
    </RUN_ATTRIBUTE>
    <RUN_ATTRIBUTE>
      <TAG>ENA-STATUS</TAG>
      <VALUE>PUBLIC</VALUE>
    </RUN_ATTRIBUTE>
    <RUN_ATTRIBUTE>
      <TAG>ENA-FIRST-PUBLIC</TAG>
      <VALUE>2012-10-05</VALUE>
    </RUN_ATTRIBUTE>
    <RUN_ATTRIBUTE>
      <TAG>ENA-LAST-UPDATE</TAG>
      <VALUE>2015-06-19</VALUE>
    </RUN_ATTRIBUTE>
    <RUN_ATTRIBUTE>
      <TAG>ENA-BASE-COUNT</TAG>
      <VALUE>688898174</VALUE>
    </RUN_ATTRIBUTE>
    <RUN_ATTRIBUTE>
      <TAG>ENA-SPOT-COUNT</TAG>
      <VALUE>3410387</VALUE>
    </RUN_ATTRIBUTE>
  </RUN_ATTRIBUTES>
</RUN>
</RUN_SET>