Keywords: GSC:MIxS;MIGS:6.0

BioSample Accession(s)

SAMN48451385, SRS27218583

collection_date

2024-09

env_broad_scale

missing

env_local_scale

missing

env_medium

missing

geo_loc_name

Russia: Moscow

isol_growth_condt

missing

lat_lon

55.65696167 N 37.69525966 E

num_replicons

missing

ref_biomaterial

missing

strain

KOS1-1

Metadata as EBI XML

<EXPERIMENT_SET>
<EXPERIMENT accession="SRX31239522" alias="IL4180" center_name="SUB15797349" broker_name="NCBI">
  <IDENTIFIERS>
    <PRIMARY_ID>SRX31239522</PRIMARY_ID>
    <SUBMITTER_ID namespace="SUB15797349">IL4180</SUBMITTER_ID>
  </IDENTIFIERS>
  <TITLE>Illumina reads for WGS of Citrobacter portucalensis strain KOS1-1</TITLE>
  <STUDY_REF accession="SRP649189">
    <IDENTIFIERS>
      <PRIMARY_ID>SRP649189</PRIMARY_ID>
      <EXTERNAL_ID namespace="BioProject">PRJNA1165690</EXTERNAL_ID>
    </IDENTIFIERS>
  </STUDY_REF>
  <DESIGN>
    <DESIGN_DESCRIPTION>NEBNext Ultra II DNA Library Prep Kit</DESIGN_DESCRIPTION>
    <SAMPLE_DESCRIPTOR accession="SRS27218583">
      <IDENTIFIERS>
        <PRIMARY_ID>SRS27218583</PRIMARY_ID>
        <EXTERNAL_ID namespace="BioSample">SAMN48451385</EXTERNAL_ID>
      </IDENTIFIERS>
    </SAMPLE_DESCRIPTOR>
    <LIBRARY_DESCRIPTOR>
      <LIBRARY_NAME>IL4180</LIBRARY_NAME>
      <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
      <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
      <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
      <LIBRARY_LAYOUT>
        <PAIRED/>
      </LIBRARY_LAYOUT>
    </LIBRARY_DESCRIPTOR>
  </DESIGN>
  <PLATFORM>
    <ILLUMINA>
      <INSTRUMENT_MODEL>Illumina MiSeq</INSTRUMENT_MODEL>
    </ILLUMINA>
  </PLATFORM>
  <EXPERIMENT_LINKS>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-SAMPLE</DB>
        <ID>SRS27218583</ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-SUBMISSION</DB>
        <ID>SRA2284896</ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-FASTQ-FILES</DB>
        <ID><![CDATA[https://www.ebi.ac.uk/ena/portal/api/filereport?accession=SRX31239522&result=read_run&fields=run_accession,fastq_ftp,fastq_md5,fastq_bytes]]></ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-SUBMITTED-FILES</DB>
        <ID><![CDATA[https://www.ebi.ac.uk/ena/portal/api/filereport?accession=SRX31239522&result=read_run&fields=run_accession,submitted_ftp,submitted_md5,submitted_bytes,submitted_format]]></ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
  </EXPERIMENT_LINKS>
  <EXPERIMENT_ATTRIBUTES>
    <EXPERIMENT_ATTRIBUTE>
      <TAG>ENA-STATUS</TAG>
      <VALUE>PUBLIC</VALUE>
    </EXPERIMENT_ATTRIBUTE>
  </EXPERIMENT_ATTRIBUTES>
</EXPERIMENT>
</EXPERIMENT_SET>

Metadata as EBI XML

<EXPERIMENT_SET>
<EXPERIMENT accession="SRX31239521" alias="NP75" center_name="SUB15797349" broker_name="NCBI">
  <IDENTIFIERS>
    <PRIMARY_ID>SRX31239521</PRIMARY_ID>
    <SUBMITTER_ID namespace="SUB15797349">NP75</SUBMITTER_ID>
  </IDENTIFIERS>
  <TITLE>Nanopore reads for WGS of Citrobacter portucalensis strain KOS1-1</TITLE>
  <STUDY_REF accession="SRP649189">
    <IDENTIFIERS>
      <PRIMARY_ID>SRP649189</PRIMARY_ID>
      <EXTERNAL_ID namespace="BioProject">PRJNA1165690</EXTERNAL_ID>
    </IDENTIFIERS>
  </STUDY_REF>
  <DESIGN>
    <DESIGN_DESCRIPTION>1D Genomic DNA Ligation Kit LSK-114, FLO-MIN114</DESIGN_DESCRIPTION>
    <SAMPLE_DESCRIPTOR accession="SRS27218583">
      <IDENTIFIERS>
        <PRIMARY_ID>SRS27218583</PRIMARY_ID>
        <EXTERNAL_ID namespace="BioSample">SAMN48451385</EXTERNAL_ID>
      </IDENTIFIERS>
    </SAMPLE_DESCRIPTOR>
    <LIBRARY_DESCRIPTOR>
      <LIBRARY_NAME>NP75</LIBRARY_NAME>
      <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
      <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
      <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
      <LIBRARY_LAYOUT>
        <SINGLE/>
      </LIBRARY_LAYOUT>
    </LIBRARY_DESCRIPTOR>
  </DESIGN>
  <PLATFORM>
    <OXFORD_NANOPORE>
      <INSTRUMENT_MODEL>MinION</INSTRUMENT_MODEL>
    </OXFORD_NANOPORE>
  </PLATFORM>
  <EXPERIMENT_LINKS>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-SAMPLE</DB>
        <ID>SRS27218583</ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-SUBMISSION</DB>
        <ID>SRA2284896</ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-FASTQ-FILES</DB>
        <ID><![CDATA[https://www.ebi.ac.uk/ena/portal/api/filereport?accession=SRX31239521&result=read_run&fields=run_accession,fastq_ftp,fastq_md5,fastq_bytes]]></ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-SUBMITTED-FILES</DB>
        <ID><![CDATA[https://www.ebi.ac.uk/ena/portal/api/filereport?accession=SRX31239521&result=read_run&fields=run_accession,submitted_ftp,submitted_md5,submitted_bytes,submitted_format]]></ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
  </EXPERIMENT_LINKS>
  <EXPERIMENT_ATTRIBUTES>
    <EXPERIMENT_ATTRIBUTE>
      <TAG>ENA-STATUS</TAG>
      <VALUE>PUBLIC</VALUE>
    </EXPERIMENT_ATTRIBUTE>
  </EXPERIMENT_ATTRIBUTES>
</EXPERIMENT>
</EXPERIMENT_SET>