Genome sc|0006186

Name

Not registered

Database

NCBI Assembly

Accession

PRJNA224116

Marked for deletion

This genome is currently not registered as the nomenclatural type or the reference genome of any names in the Registry, and it will be purged from the database soon unless it is linked to a name

Genomics

Accession

NCBI Assembly:PRJNA224116

Cultures

Strain sc|0041993

Type

Isolate Genome

Estimated Quality Metrics

Completeness: 100.0%
Contamination: 0.0%
Quality: 100.0

Ribosomal and transfer RNA genes

2 16S rRNAs (up to 100.0%)
2 23S rRNAs (up to 100.0%)
tRNAs for 19 amino acids

Sequencing depth

100.0 ×

Source

Other features

G+C Content: 34.1%

Submitter comments

The genome was assembled using SPAdes and Canu , using default settings for both MinION and Illumina data. For the MinION data, Nanopolish was used to improve the consensus sequence. The assembly resulted in three large contigs which were aligned against the closest

reference genomes using Mauve. This allowed a prediction of the orientation of the three contigs, and gaps were subsequently closed by long-range PCR using the MasterAmp extra-long PCR kit and Sanger sequencing.

Automated checks

Failed: Cannot find ncbi:assembly:PRJNA224116

Edit genome data

Last modified about 11 hours ago

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