Genome sc|0006197


Name

Not registered

Database

INSDC Nucleotide

Accession

JBYEGA010000001

Marked for deletion

This genome is currently not registered as the nomenclatural type or the reference genome of any names in the Registry, and it will be purged from the database soon unless it is linked to a name

Genomics

Accession
INSDC Nucleotide:JBYEGA010000001
Cultures
Strain sc|0041737
Type
Isolate Genome
Estimated Quality Metrics
  • Completeness: 99.99%
  • Contamination: 0.38%
  • Quality: 98.09
Sequencing depth
268.0 ×
Source
Other features
  • G+C Content: 43.0%
Submitter comments
Removal of Low-quality reads and generation of basic sequencing data statistics were obtained using Nanoq v. 0.10.0. Draft de novo assemblies were generated with Flye v. 2.9.2-b1786, setting the parameters –meta and –extra-params min_read_cov_cutoff=10. The draft assemblies were subsequently polished twice with Medaka v. 1.11.3 (Oxford Nanopore Technologies, Oxford, United Kingdom). Assembly graphs were inspected with Bandage v. 0.8.1. SemiBin2 v. 2.0.2 was implemented as an independent binning approach using a self-supervised learning model (–sequencing-type long_read –minfasta-kbs 1500). Completeness and contamination levels were assessed using CheckM2 v. 1.0.1. Genome chimerism was evaluated using GUNC v. 1.0.6.
Automated checks
Failed: Cannot find ncbi:nuccore:JBYEGA010000001

Last modified 5 days ago


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