Genome sc|0000062

Genomics

Accession

NCBI Assembly:GCA_023539395.1

Type

Metagenome-Assembled Genome (MAG)

Estimated Quality Metrics

• Completeness: 97.08%
• Contamination: 0.0%
• Quality: 97.08

Ribosomal and transfer RNA genes

• 1 16S rRNA (up to 100.0%)
• 1 23S rRNA (up to 100.0%)
• tRNAs for 19 amino acids

Sequencing depth

351.0 ×

Source

• SRA: SRX13914731

Other features

• G+C Content: 38.4%
• Coding Density: 87.18%
• Codon Table: 11
• N50: 31,616 bp
• Contigs: 82
• Largest Contig: 131,437 bp
• Assembly Length: 1,530,521 bp
• Ambiguous Assembly Fraction: 0.0%

Automated checks

Complete

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Last modified 2 months ago

Sample Metadata

BioSample entries

• BioSample: SAMN24468288

Date

Collection Date: 2019

Location

Lat Lon: 44.56097 N 110.83286 W

Toponym

Geo Loc Name: USA: Yellowstone National Park

Environment

Isolation Source: hot spring sediment from LGB-05 spring

Env Broad Scale: ENVO:00000051

Env Local Scale: ENVO:0000207

Env Medium: ENVO:0000207

Other

Depth: 1-20 cm

Package

Ncbi Submission Package: MIMS.me.sediment.6.0

Biosamplemodel: MIGS/MIMS/MIMARKS.sediment

All retrieved samples

• SAMN24468288: MIMS Environmental/Metagenome sample from hot springs metagenome

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Metadata retrieved 2 months ago