BioSample Accession(s)

SRS4575251, SAMN11312109

collection date

2011-09

geo loc name

United Kingdom: Scotland, Aberdeen

isolation source

Neutral pH arable soil

sample type

soil

strain

C13

Metadata as EBI XML

<EXPERIMENT_SET>
<EXPERIMENT accession="SRX5630210" alias="C13_Illumina" center_name="SUB5395835" broker_name="NCBI">
  <IDENTIFIERS>
    <PRIMARY_ID>SRX5630210</PRIMARY_ID>
    <SUBMITTER_ID namespace="SUB5395835">C13_Illumina</SUBMITTER_ID>
  </IDENTIFIERS>
  <TITLE>Genome sequencing of Nitrosocosmicus franklandus C13</TITLE>
  <STUDY_REF accession="SRP190433">
    <IDENTIFIERS>
      <PRIMARY_ID>SRP190433</PRIMARY_ID>
      <SUBMITTER_ID namespace="SUB5395835">bp0</SUBMITTER_ID>
    </IDENTIFIERS>
  </STUDY_REF>
  <DESIGN>
    <DESIGN_DESCRIPTION>DNA was extracted using a standard SDS/Proteinase K/CTAB extraction followed by P:C:I extraction and isopropanol precipitation precipitation</DESIGN_DESCRIPTION>
    <SAMPLE_DESCRIPTOR accession="SRS4575251">
      <IDENTIFIERS>
        <PRIMARY_ID>SRS4575251</PRIMARY_ID>
        <SUBMITTER_ID namespace="pda|gdubyanicol">C13</SUBMITTER_ID>
      </IDENTIFIERS>
    </SAMPLE_DESCRIPTOR>
    <LIBRARY_DESCRIPTOR>
      <LIBRARY_NAME>C13_Illumina</LIBRARY_NAME>
      <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
      <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
      <LIBRARY_SELECTION>unspecified</LIBRARY_SELECTION>
      <LIBRARY_LAYOUT>
        <PAIRED/>
      </LIBRARY_LAYOUT>
    </LIBRARY_DESCRIPTOR>
  </DESIGN>
  <PLATFORM>
    <ILLUMINA>
      <INSTRUMENT_MODEL>Illumina MiSeq</INSTRUMENT_MODEL>
    </ILLUMINA>
  </PLATFORM>
  <EXPERIMENT_LINKS>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-SAMPLE</DB>
        <ID>SRS4575251</ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-SUBMISSION</DB>
        <ID>SRA869187</ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-FASTQ-FILES</DB>
        <ID><![CDATA[https://www.ebi.ac.uk/ena/portal/api/filereport?accession=SRX5630210&result=read_run&fields=run_accession,fastq_ftp,fastq_md5,fastq_bytes]]></ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-SUBMITTED-FILES</DB>
        <ID><![CDATA[https://www.ebi.ac.uk/ena/portal/api/filereport?accession=SRX5630210&result=read_run&fields=run_accession,submitted_ftp,submitted_md5,submitted_bytes,submitted_format]]></ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
  </EXPERIMENT_LINKS>
  <EXPERIMENT_ATTRIBUTES>
    <EXPERIMENT_ATTRIBUTE>
      <TAG>ENA-STATUS</TAG>
      <VALUE>PUBLIC</VALUE>
    </EXPERIMENT_ATTRIBUTE>
  </EXPERIMENT_ATTRIBUTES>
</EXPERIMENT>
</EXPERIMENT_SET>

Metadata as EBI XML

<EXPERIMENT_SET>
<EXPERIMENT accession="SRX5630209" alias="C13_MinION" center_name="SUB5395835" broker_name="NCBI">
  <IDENTIFIERS>
    <PRIMARY_ID>SRX5630209</PRIMARY_ID>
    <SUBMITTER_ID namespace="SUB5395835">C13_MinION</SUBMITTER_ID>
  </IDENTIFIERS>
  <TITLE>Genome sequencing of Nitrosocosmicus franklandus C13</TITLE>
  <STUDY_REF accession="SRP190433">
    <IDENTIFIERS>
      <PRIMARY_ID>SRP190433</PRIMARY_ID>
      <SUBMITTER_ID namespace="SUB5395835">bp0</SUBMITTER_ID>
    </IDENTIFIERS>
  </STUDY_REF>
  <DESIGN>
    <DESIGN_DESCRIPTION>DNA was extracted using a standard SDS/Proteinase K/CTAB extraction followed by P:C:I extraction and isopropanol precipitation</DESIGN_DESCRIPTION>
    <SAMPLE_DESCRIPTOR accession="SRS4575251">
      <IDENTIFIERS>
        <PRIMARY_ID>SRS4575251</PRIMARY_ID>
        <SUBMITTER_ID namespace="pda|gdubyanicol">C13</SUBMITTER_ID>
      </IDENTIFIERS>
    </SAMPLE_DESCRIPTOR>
    <LIBRARY_DESCRIPTOR>
      <LIBRARY_NAME>C13_MinION</LIBRARY_NAME>
      <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
      <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
      <LIBRARY_SELECTION>unspecified</LIBRARY_SELECTION>
      <LIBRARY_LAYOUT>
        <SINGLE/>
      </LIBRARY_LAYOUT>
    </LIBRARY_DESCRIPTOR>
  </DESIGN>
  <PLATFORM>
    <OXFORD_NANOPORE>
      <INSTRUMENT_MODEL>MinION</INSTRUMENT_MODEL>
    </OXFORD_NANOPORE>
  </PLATFORM>
  <EXPERIMENT_LINKS>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-SAMPLE</DB>
        <ID>SRS4575251</ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-SUBMISSION</DB>
        <ID>SRA869187</ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-FASTQ-FILES</DB>
        <ID><![CDATA[https://www.ebi.ac.uk/ena/portal/api/filereport?accession=SRX5630209&result=read_run&fields=run_accession,fastq_ftp,fastq_md5,fastq_bytes]]></ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-SUBMITTED-FILES</DB>
        <ID><![CDATA[https://www.ebi.ac.uk/ena/portal/api/filereport?accession=SRX5630209&result=read_run&fields=run_accession,submitted_ftp,submitted_md5,submitted_bytes,submitted_format]]></ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
  </EXPERIMENT_LINKS>
  <EXPERIMENT_ATTRIBUTES>
    <EXPERIMENT_ATTRIBUTE>
      <TAG>ENA-STATUS</TAG>
      <VALUE>PUBLIC</VALUE>
    </EXPERIMENT_ATTRIBUTE>
  </EXPERIMENT_ATTRIBUTES>
</EXPERIMENT>
</EXPERIMENT_SET>