Genome sc|0006257 Ts


Database

NCBI Assembly

Accession

GCA_059870165.1

Typification

Nomenclatural type of:

Genomics

Accession
NCBI Assembly: GCA_059870165.1 [NCBI | EMBL]
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
  • Completeness: 96.2%
  • Contamination: 3.8%
  • Quality: 77.2
Ribosomal and transfer RNA genes
  • 1 16S rRNA (up to 100.0%)
  • 1 23S rRNA (up to 100.0%)
  • tRNAs for 20 amino acids
Sequencing depth
173.0 ×
Source
Other features
  • G+C Content: 31.88%
  • Coding Density: 87.38%
  • Codon Table: 11
  • N50: 45,639 bp
  • Contigs: 54
  • Largest Contig: 124,110 bp
  • Assembly Length: 1,266,221 bp
  • Ambiguous Assembly Fraction: 0.0%
Automated checks
Complete

Last modified about 1 month ago

Sample Metadata

BioSample entries
Date
Collection Date: 2021-08-31 • 2021-07-26
Location
Lat Lon: 26° 4′ 48″ N, 119° 16′ 48″ E
View map of sampling locations
Toponym
Geo Loc Name: China:Fuzhou
Environment
Env Broad Scale: microbiome,16S barcoded pyrosequencing
Env Local Scale: irritable bowel syndrome/health
Env Medium: fecal
Other
Host: Homo sapiens
Package
All retrieved samples

Metadata retrieved about 1 month ago

Sequencing Experiments

SRR38785519
SRR38785528
SRR38785527


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