SeqCode Registry
cognitis nomina
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Genomes
sc|0006269
JSON
Genome sc|0006269
Name
“Phycorickettsia trachydisci”
Database
NCBI Assembly
Accession
GCA_003015145.1
Typification
Nomenclatural type of:
“Phycorickettsia trachydisci”
Genomics
Accession
NCBI Assembly:
GCA_003015145.1
Estimated Quality Metrics
Completeness:
97.2%
Contamination:
0.9%
Quality:
92.7
Ribosomal and transfer RNA genes
1 16S rRNA (up to 100.0%)
1 23S rRNA (up to 100.0%)
tRNAs for 20 amino acids
Source
BioSample: SAMN08668684
Other features
G+C Content:
34.07%
Coding Density:
90.01%
Codon Table:
11
N50:
1,472,411 bp
Contigs:
1
Largest Contig:
1,472,411 bp
Assembly Length:
1,472,411 bp
Ambiguous Assembly Fraction:
0.0%
Automated checks
Complete
Last modified
about 3 hours ago
Sample Metadata
BioSample entries
BioSample: SAMN08668684
Date
Collection Date:
2008
Location
Not detected
Toponym
Geo Loc Name:
Czech Republic: Temelin
Environment
Sample Type:
mixed culture
Other
Host:
Trachydiscus minutus
Package
Not detected
All retrieved samples
SAMN08668684
: Microbe sample from Candidatus Phycorickettsia trachydisci
Metadata retrieved
about 4 hours ago
© 2022-2026 The SeqCode Initiative
All information contributed to the SeqCode Registry is released under the terms of the
Creative Commons Attribution (CC BY) 4.0
license
Automated Estimates
×
This genome was automatically retrieved and processed using MiGA (The Microbial Genomes Atlas)
[1]
, and the estimate has not been overridden by the submitter.
Rodriguez-R et al, 2018, NAR.
DOI: 10.1093/nar/gky467
SAMN08668684
×
Metadata retrieved using the EBI BioSample API
BioSample Accession(s)
SAMN08668684
collection date
2008
geo loc name
Czech Republic: Temelin
host
Trachydiscus minutus
isolate
CCALA 838
sample type
mixed culture
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