JSON

Genome sc|0006291 Ts

Name

“Aquarickettsia rohweri”

Database

NCBI Assembly

Accession

GCA_003953955.1

Typification

Nomenclatural type of:

Genomics

Accession
NCBI Assembly: GCA_003953955.1 [NCBI | EMBL]
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
  • Completeness: 95.32%
  • Contamination: 2.86%
  • Quality: 81.02
Ribosomal and transfer RNA genes
  • 1 16S rRNA (up to 100.0%)
  • 1 23S rRNA (up to 100.0%)
  • tRNAs for 20 amino acids
Sequencing depth
305.0 ×
Source
Other features
  • G+C Content: 27.59%
  • Coding Density: 87.53%
  • Codon Table: 11
  • N50: 10,860 bp
  • Contigs: 155
  • Largest Contig: 35,498 bp
  • Assembly Length: 1,284,848 bp
  • Ambiguous Assembly Fraction: 0.0%
Submitter comments
Completeness and contamination estimated with CheckM v1.2.5

Automated checks
Complete
Last modified about 12 hours ago

Sample Metadata

BioSample entries
Date
Collection Date: 2013-06
Location
Lat Lon: 24° 57′ 51″ N, 80° 27′ 8.6″ W
View map of sampling locations
Toponym
Geo Loc Name: USA: Key Largo, Florida
Environment
Env Material: coral tissue
Env Biome: coral reef
Isolation Source: coral tissue
Env Broad Scale: coral reef
Env Local Scale: Coral nursery, Florida Keys
Env Medium: coral tissue
Other
Host: Acropora cervicornis
Depth: 30ft
Package
Not detected
All retrieved samples
Metadata retrieved about 13 hours ago


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