Genome sc|0000063

Genomics

Accession

NCBI Assembly:GCA_023254095.1

Type

Metagenome-Assembled Genome (MAG)

Estimated Quality Metrics

• Completeness: 98.06%
• Contamination: 0.97%
• Quality: 93.21

Ribosomal and transfer RNA genes

• 1 16S rRNA (up to 44.0%)
• 2 23S rRNAs (up to 54.0%)
• tRNAs for 20 amino acids

Sequencing depth

150.0 ×

Source

• BioSample: SAMN26029325
• BioSample: SAMN27648497

Other features

• G+C Content: 40.7%
• Coding Density: 87.94%
• Codon Table: 11
• N50: 115,798 bp
• Contigs: 32
• Largest Contig: 240,564 bp
• Assembly Length: 1,609,249 bp
• Ambiguous Assembly Fraction: 0.031%

Automated checks

Complete

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Last modified 8 days ago

Sample Metadata

BioSample entries

• BioSample: SAMN26029325
• BioSample: SAMN27648497

Date

Collection Date: 2018-03

Location

Lat Lon: 24.95110 N 98.43597 E

Toponym

Geo Loc Name: China: Tengchong, Zhenzhu hot spring

Environment

Sample Type: metagenomic assembly

Isolation Source: hot springs sediment

Env Broad Scale: hot spring biome

Other

Not detected

Package

Ncbi Submission Package: MIMAG.sediment.6.0 • Metagenome.environmental.1.0

Biosamplemodel: MIMAG.sediment • Metagenome or environmental

All retrieved samples

• SAMN26029325: MIMAG Metagenome-assembled Genome sample from Candidatus Geocrenenecus huangii
• SAMN27648497: Metagenome or environmental sample from hot springs metagenome

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Metadata retrieved 8 days ago