JSON

Genome sc|0006307 Ts

Name

“Thermonerobacter thiotrophicus”

Database

NCBI Assembly

Accession

GCA_003731685.1

Typification

Nomenclatural type of:

Genomics

Accession
NCBI Assembly: GCA_003731685.1 [NCBI | EMBL]
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
  • Completeness: 90.6%
  • Contamination: 3.3%
  • Quality: 74.1
Ribosomal and transfer RNA genes
  • 0 16S rRNAs
  • 1 23S rRNA (up to 30.0%)
  • tRNAs for 20 amino acids
Sequencing depth
60.0 ×
Source
Other features
  • G+C Content: 38.46%
  • Coding Density: 92.65%
  • Codon Table: 11
  • N50: 50,855 bp
  • Contigs: 109
  • Largest Contig: 158,080 bp
  • Assembly Length: 2,601,062 bp
  • Ambiguous Assembly Fraction: 0.038%
Automated checks
Complete
Last modified about 5 hours ago

Sample Metadata

BioSample entries
Date
Collection Date: 2011-08-10
Location
Lat Lon: 44° 32′ 20″ N, 110° 47′ 53″ W
View map of sampling locations
Toponym
Geo Loc Name: USA: Wyoming, Yellowstone National Park, Mushroom Spring
Environment
Sample Type: metagenomic assembly
Isolation Source: hot spring microbial mat
Other
Not detected
Package
Not detected
All retrieved samples
Metadata retrieved about 5 hours ago


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