SeqCode Registry
cognitis nomina
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Genomes
sc|0006309
Ts
JSON
Genome sc|0006309
Ts
Name
“Allopolytropus marinifundi”
Database
NCBI Assembly
Accession
GCA_003935005.1
Typification
Nomenclatural type of:
“Allopolytropus marinifundi”
Genomics
Accession
NCBI Assembly:
GCA_003935005.1
[
NCBI
|
EMBL
]
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
Completeness:
99.84%
Contamination:
1.96%
Quality:
90.04
Ribosomal and transfer RNA genes
1 16S rRNA (up to 57.0%)
0 23S rRNAs
tRNAs for 20 amino acids
Sequencing depth
10.0 ×
Other features
G+C Content:
40.21%
Coding Density:
89.42%
Codon Table:
11
N50:
233,158 bp
Contigs:
21
Largest Contig:
309,971 bp
Assembly Length:
2,128,522 bp
Ambiguous Assembly Fraction:
0.014%
Submitter comments
Completeness and contamination estimated with CheckM v1.0.8
Automated checks
Complete
Last modified
about 4 hours ago
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All information contributed to the SeqCode Registry is released under the terms of the
Creative Commons Attribution (CC BY) 4.0
license
Automated Estimates
×
This genome was automatically retrieved and processed using MiGA (The Microbial Genomes Atlas)
[1]
, and the estimate has not been overridden by the submitter.
Rodriguez-R et al, 2018, NAR.
DOI: 10.1093/nar/gky467
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