SeqCode Registry
cognitis nomina
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Genomes
sc|0006494
Ts
JSON
Genome sc|0006494
Ts
Name
“Enterovibrio altilux”
Database
NCBI Assembly
Accession
GCA_002381345.1
Typification
Nomenclatural type of:
“Enterovibrio altilux”
Genomics
Accession
NCBI Assembly:
GCA_002381345.1
[
NCBI
|
EMBL
]
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
Completeness:
99.1%
Contamination:
1.9%
Quality:
89.6
Ribosomal and transfer RNA genes
2 16S rRNAs (up to 100.0%)
1 23S rRNA (up to 100.0%)
tRNAs for 20 amino acids
Source
BioSample: SAMN06128235
Other features
G+C Content:
37.67%
Coding Density:
58.3%
Codon Table:
11
N50:
1,604,791 bp
Contigs:
4
Largest Contig:
1,604,791 bp
Assembly Length:
2,143,556 bp
Ambiguous Assembly Fraction:
0.0093%
Automated checks
Complete
Last modified
1 day ago
Sample Metadata
BioSample entries
BioSample: SAMN06128235
Date
Collection Date:
2015-08-16
Location
Lat Lon:
28° N, 88° W
View map of sampling locations
Toponym
Geo Loc Name:
USA: Gulf of Mexico
Environment
Isolation Source:
escal light organ
Other
Host:
Cryptopsaras couesii
Package
Not detected
All retrieved samples
SAMN06128235
: Metagenome from Cryptopsaras couesii luminous bacterial symbiont
Metadata retrieved
1 day ago
© 2022-2026 The SeqCode Initiative
All information contributed to the SeqCode Registry is released under the terms of the
Creative Commons Attribution (CC BY) 4.0
license
Automated Estimates
×
This genome was automatically retrieved and processed using MiGA (The Microbial Genomes Atlas)
[1]
, and the estimate has not been overridden by the submitter.
Rodriguez-R et al, 2018, NAR.
DOI: 10.1093/nar/gky467
Sampling locations
×
SAMN06128235
×
Metadata retrieved using the EBI BioSample API
BioSample Accession(s)
SAMN06128235, ERS21174032
collection date
2015-08-16
geo loc name
USA: Gulf of Mexico
host
Cryptopsaras couesii
isolation source
escal light organ
lat lon
28 N 88 W
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