JSON

Genome sc|0006499 Ts

Name

“Methanoculleus thermohydrogenitrophicus”

Database

NCBI Assembly

Accession

GCA_001512375.1

Typification

Nomenclatural type of:

Genomics

Accession
NCBI Assembly: GCA_001512375.1 [NCBI | EMBL]
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
  • Completeness: 96.2%
  • Contamination: 3.8%
  • Quality: 77.2
Ribosomal and transfer RNA genes
  • 1 16S rRNA (up to 100.0%)
  • 1 23S rRNA (up to 100.0%)
  • tRNAs for 19 amino acids
Source
Other features
  • G+C Content: 58.8%
  • Coding Density: 82.2%
  • Codon Table: 11
  • N50: 17,178 bp
  • Contigs: 287
  • Largest Contig: 94,077 bp
  • Assembly Length: 2,153,167 bp
  • Ambiguous Assembly Fraction: 1.09%
Automated checks
Complete
Last modified 2 days ago

Sample Metadata

BioSample entries
Date
Collection Date: 2014-05-21
Location
Lat Lon: 55° 47′ 18″ N, 12° 31′ 35″ E
View map of sampling locations
Toponym
Geo Loc Name: Denmark: Kgs. Lyngby
Environment
Env Material: Cattle manure
Sample Type: metagenomic assembly
Env Biome: Wastewater/sludge
Isolation Source: pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle manure in continuous reactors for biogas production (methane)
Other
Rel To Oxygen: anaerobe
Package
Not detected
All retrieved samples
Metadata retrieved 2 days ago


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