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Genome sc|0006947 Ts

Name

“Saccharicenans subterraneus”

Database

NCBI Assembly

Accession

GCA_003426165.1

Typification

Nomenclatural type of:

Genomics

Accession
NCBI Assembly: GCA_003426165.1 [NCBI | EMBL]
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
  • Completeness: 96.2%
  • Contamination: 2.8%
  • Quality: 82.2
Ribosomal and transfer RNA genes
  • 1 16S rRNA (up to 100.0%)
  • 1 23S rRNA (up to 100.0%)
  • tRNAs for 20 amino acids
Sequencing depth
117.0 ×
Source
Other features
  • G+C Content: 54.52%
  • Coding Density: 88.43%
  • Codon Table: 11
  • N50: 209,057 bp
  • Contigs: 25
  • Largest Contig: 375,297 bp
  • Assembly Length: 2,899,266 bp
  • Ambiguous Assembly Fraction: 0.0%
Submitter comments
In the original publication (Kadnikov et al. 2019), analysis of the presence of a set of 188 conservative single-copy marker genes in the BY38 genome with CheckM v. 1.05  estimated that the completeness of this MAG was 95%, with a possible 5% contamination. Similar estimates, 96% completeness and 2% contamination, were obtained using Anvi’o v.4
Automated checks
Complete
Last modified about 6 hours ago

Sample Metadata

BioSample entries
Date
Collection Date: 2014-08-05
Location
Lat Lon: 58° 26′ 59″ N, 85° 1′ 40″ E
View map of sampling locations
Toponym
Geo Loc Name: Russia: Byelii Yar, Tomsk region (Western Siberia)
Environment
Sample Type: metagenomic assembly
Isolation Source: 2-km deep subsurface thermal aquifer
Other
Not detected
Package
Not detected
All retrieved samples
Metadata retrieved about 7 hours ago


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