SeqCode Registry
cognitis nomina
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Genomes
sc|0000070
JSON
Genome sc|0000070
Database
INSDC Nucleotide
Accession
CP097899.1
Genomics
Accession
INSDC Nucleotide:
CP097899.1
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
Completeness:
98.0%
(automated estimate: 100.0%)
Contamination:
0.7%
(automated estimate: 6.6%)
Quality:
94.5
(automated estimate: 67.0)
Ribosomal and transfer RNA genes
8 16S rRNAs (up to 100.0%)
(automated estimate: 8)
8 23S rRNAs (up to 100.0%)
(automated estimate: 8)
tRNAs for 89 amino acids
(automated estimate: 20)
Sequencing depth
123.0 ×
Source
BioSample: SAMN28659477
Other features
G+C Content:
37.8%
(automated estimate: 37.83%)
Coding Density:
85.47%
Codon Table:
11
N50:
5,268,630 bp
Contigs:
1
Largest Contig:
5,268,630 bp
Assembly Length:
5,268,630 bp
Ambiguous Assembly Fraction:
0.0%
Automated checks
Complete
Sample Metadata
Date
Collection Date:
not available
Location
Lat Lon:
5.931 N 73.304 W
Toponym
Geo Loc Name:
Colombia:Gambita
Environment
Isolation Source:
decomposition metagenome
Env Broad Scale:
ENVO:00002261
Env Local Scale:
ENVO:00002261
Env Medium:
ENVO:00001998
Other
Not detected
Package
Ncbi Submission Package:
MIMAG.5.0
Biosamplemodel:
MIMAG
Additional Accessions
SAMN28657967, SAMN28657968, SAMN28657969
Append as BioSamples
All retrieved samples
SAMN28659477
: MIMAG Metagenome-assembled Genome sample from Bacillaceae bacterium
Metadata retrieved
8 months ago
© 2022-2024 The SeqCode Initiative
All information contributed to the SeqCode Registry is released under the terms of the
Creative Commons Attribution (CC BY) 4.0
license
Automated Estimates
×
This genome was automatically retrieved and processed using MiGA (The Microbial Genomes Atlas)
[1]
, and the estimate has not been overridden by the submitter.
Rodriguez-R et al, 2018, NAR.
DOI: 10.1093/nar/gky467
SAMN28659477
×
Keywords: GSC:MIxS;MIMAG:5.0
collection_date
not available
isolate
MAG5
NCBI submission package
MIMAG.5.0
experimental_factor
MELMC
organism
Bacillaceae bacterium
env_broad_scale
ENVO:00002261
derived-from
This BioSample is a metagenomic assembly obtained from the decomposition metagenome BioSample: SAMN28657967, SAMN28657968, SAMN28657969
geo_loc_name
Colombia:Gambita
env_medium
ENVO:00001998
lat_lon
5.931 N 73.304 W
env_local_scale
ENVO:00002261
isolation_source
decomposition metagenome
BioSampleModel
MIMAG
ENA-FIRST-PUBLIC
2022-05-25
ENA-LAST-UPDATE
2022-05-25
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