SeqCode Registry
cognitis nomina
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Genomes
sc|0000072
JSON
Genome sc|0000072
Database
NCBI Assembly
Accession
CP013099
Genomics
Accession
NCBI Assembly:
CP013099
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
Completeness:
99.63%
(automated estimate: 99.1%)
Contamination:
2.05%
(automated estimate: 2.8%)
Quality:
89.38
(automated estimate: 85.1)
Ribosomal and transfer RNA genes
1 16S rRNA (up to 100.0%)
(automated estimate: 1)
1 23S rRNA (up to 100.0%)
(automated estimate: 1)
tRNAs for 19 amino acids
(automated estimate: 20)
Sequencing depth
400.0 ×
Source
BioSample: SAMN04120379
Other features
G+C Content:
59.2%
(automated estimate: 59.19%)
Coding Density:
90.01%
Codon Table:
11
N50:
3,656,958 bp
Contigs:
2
Largest Contig:
3,656,958 bp
Assembly Length:
3,763,866 bp
Ambiguous Assembly Fraction:
0.0%
Automated checks
Complete
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All information contributed to the SeqCode Registry is released under the terms of the
Creative Commons Attribution (CC BY) 4.0
license
Automated Estimates
×
This genome was automatically retrieved and processed using MiGA (The Microbial Genomes Atlas)
[1]
, and the estimate has not been overridden by the submitter.
Rodriguez-R et al, 2018, NAR.
DOI: 10.1093/nar/gky467
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