JSON

Genome sc|0000075

Name

Not registered

Database

NCBI Assembly

Accession

GCA_943192945.1

Marked for deletion

This genome is currently not registered as the nomenclatural type or the reference genome of any names in the Registry, and it will be purged from the database soon unless it is linked to a name

Genomics

Accession
NCBI Assembly:GCA_943192945.1
Type
Isolate Genome
Estimated Quality Metrics
  • Completeness: 96.2%
  • Contamination: 1.9%
  • Quality: 86.7
Ribosomal and transfer RNA genes
  • 1 16S rRNA (up to 100.0%)
  • 1 23S rRNA (up to 100.0%)
  • tRNAs for 20 amino acids
Sequencing depth
40.0 ×
Source
Other features
  • G+C Content: 50.33%
  • Coding Density: 89.91%
  • Codon Table: 11
  • N50: 262,420 bp
  • Contigs: 12
  • Largest Contig: 400,106 bp
  • Assembly Length: 1,970,454 bp
  • Ambiguous Assembly Fraction: 0.0%
Automated checks
Complete
Edit genome data
Last modified about 1 year ago

Sample Metadata

BioSample entries
Date
Collection Date: 2022-04-22
Location
Geographic Location Latitude: 50.776389
Geographic Location Longitude: 6.043611
Toponym
Geographic Location Country And Or Sea: Germany
Environment
Environment Biome: mouse gastrointestinal tract
Environment Feature: mouse intestine
Other
Not detected
Package
Ena Checklist: ERC000013
All retrieved samples
Metadata retrieved about 1 year ago


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